Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2024 ATGGACTCTTCTTCTTCATCACCGCCAAACAATAACAATAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTTCCCAACCCTTCTTCCTCTCCCCTCTCTCTTTTCCATTCCTTCACCTATCCTTCTCTCTCCCTCACAGGCAGCAACTCGGTGGATACTGCACCGCCTGAGGCTACCGCCTGCGGACGAGCGACCAACCTCTCCATATTCAGTGGCGGCCCCAAGTTCGAGGACTTTCTGGGTGGTTCCGCCGCAACAGCCACCACCGCCACGTGTGCACCTGCACAGCTTCCGCAGTTCTCCACCGACAACCATCTATACGATTCGGAGCTGAAGACAACAATAGCCGCATGCTTCCCTCGTGGCTTCGCCACAGCCGAACCGCAAAAACCTTCTCCAAAGAAAACCGTCGACACCTTCGGCCAGCGCACCTCCATCTACCGCGGCGTCACCCGACATAGATGGACCGGGAGATATGAGGCTCATCTTTGGGACAATAGTTGTAGAAGGGAAGGGCAAAGCAGGAAAGGAAGACAAGTGAATGGGTGCTATGGTGTTGTTGTTGAAGATTCTGACCTTGCTTTCTTTTGTTTCTTTGCGTGGCTTTTGTACCTGGGGAATGATTGCTCACTCGTGGGATCTTTTGCTCATTATGTGCTTTCAGTTTACTTGGGTGGTTATGACAAGGAAGATAAGGCAGCCAGAGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCCATTTCCAACTATGAGAAGGAACTGGAGGTGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCCTCCATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACCCAAGAAGAAGCTGCTGAGGCTTATGACATTGCTGCTATAAAATTCAGGGGATTAAATGCAGTGACAAACTTTGACATGAGTCGCTACGATGTAAAAAGCATTGCAAATAGCACTCTTCCCATTGGAGGTTTATCTAGCAAGAACAAGAACTCGACAGATTCTGCAGCAGCATCTGAGAGCAAAAGCCAGGAGGCAAGCCGATCTGACGAACGAGATCATCCATCATCGGCTTCATCCGTTACCTTTGCACCACAGCAGCAACAACCTTCAAGCTCCACCTTGAGCTTTGCCATCCCCATTAAGCAAGACCCTACAGATTATTGGTCTATTCTTGGGTACCATAATAATACTACTCCCCTTGACAACAGTGGCATCGGGAACACAACTAATGGGAGTGCTGCTAGTAGTGTGACACCCTTCCACGTGGACTTCCCAAGTGCACCCTCTAGTGCCGGCAGTGATAACAATAACAATAACAATGCCACGTTTTTCAGTGGAGGTGGCATCTTTGTTCAGCAACAAAGTTGTCTTGGTAATGGTCATGGAAATGGAAGCAGTGGTTCCTCCTCCTCATCTTCTTCTTCTTTAAGCTGTTCAATCCCAATCGCCACGCCCATATTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGGTTATGGAAACTGGATTGGACCAAGCCTGCACACATTCCCATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTCGGCATGGAATGA 1722 0.489 MDSSSSSPPNNNNNNNSLAFSLSNHFPNPSSSPLSLFHSFTYPSLSLTGSNSVDTAPPEATACGRATNLSIFSGGPKFEDFLGGSAATATTATCAPAQLPQFSTDNHLYDSELKTTIAACFPRGFATAEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVNGCYGVVVEDSDLAFFCFFAWLLYLGNDCSLVGSFAHYVLSVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELEVMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSTDSAAASESKSQEASRSDERDHPSSASSVTFAPQQQQPSSSTLSFAIPIKQDPTDYWSILGYHNNTTPLDNSGIGNTTNGSAASSVTPFHVDFPSAPSSAGSDNNNNNNATFFSGGGIFVQQQSCLGNGHGNGSSGSSSSSSSSLSCSIPIATPIFSLNSNTSYESSGYGNWIGPSLHTFPSHAKPSLFQTPIFGME 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2024 573 MobiDBLite consensus disorder prediction 365 420 - -
Aed6g2024 573 MobiDBLite consensus disorder prediction 1 20 - -
Aed6g2024 573 ProSiteProfiles AP2/ERF domain profile. 292 350 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 SUPERFAMILY DNA-binding domain 291 352 IPR016177 GO:0003677
Aed6g2024 573 MobiDBLite consensus disorder prediction 400 420 - -
Aed6g2024 573 CDD AP2 147 258 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 572 - -
Aed6g2024 573 Gene3D AP2/ERF domain 292 352 IPR036955 GO:0003700|GO:0006355
Aed6g2024 573 Pfam AP2 domain 292 342 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL5 17 572 - -
Aed6g2024 573 SUPERFAMILY DNA-binding domain 223 258 IPR016177 GO:0003677
Aed6g2024 573 SMART rav1_2 292 356 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 SMART rav1_2 148 262 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 Gene3D AP2/ERF domain 148 258 IPR036955 GO:0003700|GO:0006355
Aed6g2024 573 ProSiteProfiles AP2/ERF domain profile. 148 256 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 MobiDBLite consensus disorder prediction 365 387 - -
Aed6g2024 573 CDD AP2 291 352 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Aed6g2024 573 PRINTS Ethylene responsive element binding protein signature 238 258 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2024 Aed-Chr6 23011612 23015351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2024 108 505 AP2-EREBP Transcription Factor Family AT5G57390 54.824 3.39e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g2024 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2024 K09285 - gmx:100797828 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2024 6 23011612 23015351 Aed6g2024 6 23011612 23015351 ECH