Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2023 ATGTATTCGAGTCCAAGCCAGTTCGACGGCAATGCAGCCTTCTCTGGCGGTGGATTCATGCCTTCTCAGACCACTCAGGGCGGCCCTGACTCTTCGTTCCTTCCCTCCAAGAATCGCGACGCTCAGTCCTTGCTTCCTCTGACAGTAAAGCAGATACATGATGCGGCTCAGTCAAGCGATGATAAAGTCAATTTGATTGTTGATGGTGTGGATGTTAGCAATGTCACTCTTGTAGGAAGGGTGTCAAACAGAGCTGAACGAGTTACTGATGTTGCTTTTGTGCTTGATGATGGCACTGGGAGGATTGCGTGTACTAAATGGATTCATGAAGCTGTTGATACAAATGTAGCAGATGCCATTGTGGATGGAATATATGCAAGGCTCCATGGACAATTGAAAAATTTTCAGGGTAAAAGGACCTTAACTGTTTTCTCTTTTAGGCCTGTGACTGACTTTAATGAGATTGCAAGTCATTTCATCGATTGCATATATGTGCATCTCTACAATTCCAGATTACGGACTGGTGTCCCTAATCAGCAACATACCTCACCAATTACCCCTACAACAGGTTATCAAGCTCAAGGCATTCCACCAACAAATCAGTTCTCTGATCAACCTATCAATGGTCATAAGCGTGTTGAAGATATGGTCACAGATTTTTTGCTTTTTCCCGCAAACTGCTCAAGGAGTGAGGGAGTCCATCGTGATCATATTGCACAGCATCTTGGAATTTCTTTGGATGAGCTCATGCTGGCTGTTAAAAATCTTATTGATGAAGGTACTGTTTATGAAACCATAAGTGATCACTATAAGTCAACCATCAATGGCTGA 831 0.4332 MYSSPSQFDGNAAFSGGGFMPSQTTQGGPDSSFLPSKNRDAQSLLPLTVKQIHDAAQSSDDKVNLIVDGVDVSNVTLVGRVSNRAERVTDVAFVLDDGTGRIACTKWIHEAVDTNVADAIVDGIYARLHGQLKNFQGKRTLTVFSFRPVTDFNEIASHFIDCIYVHLYNSRLRTGVPNQQHTSPITPTTGYQAQGIPPTNQFSDQPINGHKRVEDMVTDFLLFPANCSRSEGVHRDHIAQHLGISLDELMLAVKNLIDEGTVYETISDHYKSTING 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2023 276 SUPERFAMILY "Winged helix" DNA-binding domain 209 273 IPR036390 -
Aed6g2023 276 MobiDBLite consensus disorder prediction 13 37 - -
Aed6g2023 276 PANTHER REPLICATION PROTEIN A-RELATED 5 273 IPR040260 -
Aed6g2023 276 SUPERFAMILY Nucleic acid-binding proteins 44 170 IPR012340 -
Aed6g2023 276 CDD RPA2_DBD_D 74 167 - -
Aed6g2023 276 PIRSF RPA32 2 274 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aed6g2023 276 Pfam Replication protein A C terminal 166 268 IPR014892 -
Aed6g2023 276 Pfam OB-fold nucleic acid binding domain 75 147 IPR004365 GO:0003676
Aed6g2023 276 Gene3D - 36 171 IPR012340 -
Aed6g2023 276 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 5 273 - -
Aed6g2023 276 Gene3D - 206 274 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2023 Aed-Chr6 23000780 23004637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2023 1 271 Core DNA Replication Machinery Family AT2G24490 43.617 1.60e-72 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2023 K10739 - gmx:100782819 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2023 6 23000780 23004637 Aed6g2023 6 23000780 23004637 ECH