Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2022 ATGATCTTTACAGTGATCACACCAAATCGTGAAGTTTTGAACTCTGTGTATGCATGCATTTGGATTCTGCAAGTGACGACGAAGAAGAAGAAGCATGAATTCGAGTTCAACCGGGTTCGAAGGCAACACAGCCTTCTCCTCAGCCTGAACCTTCCACCTTCTTTATCTCCAAGCTTGATCTCCATTTATTTACCGAATCGTGATGCTCAAACCATGCTTCCTCTGACGGTGAAGCAGATATACGATGCGTCTGATCCCTCAAGTGATGGTGAAATAAATTTGTTTGTTAATGGTGCAGACCTTACCAACTTTACTCTCGTAGGAAAGGTGTGCAACAAAGCTGCGGGAATTACAGCTGATGTCATCACTTTTGTGCTTGATGATGGTACTGGCCGGATTCACTTGTTTATGTACATGCACGCAGGCTTCACGGAGCTGTTGAAACAGACCAGGACTTTCATTACTAGGGACGGAATGTATGTGAGGCTCTATGGACAGTTGATAACATATCAGAGTAAAAAGATCTTAACTGTTTTCTCTTTTAGGCCTGTTACTTACTTTAATGAGATTACCAGTCATTTCATCGATTGCATATATGTGCATCTCTATAATTCCAAGAAACAGGCATATATATTTTGCAAATTTCATACTAGTGTCCATATCTTGAATTCCACACCAATTGCTCCCTCAAAAGGTTACCAAGCTGATCAAGCTATTCTACCACCAAATCAGTTCTCTGGTCAGAAGAGTGTTGGAGCTATGGTCTTAGATTTTTTGCTTCATCCCGCAAACAGGTCAAGGAATGAGGGAGTTCATCGTGATCTTATTGCACAGCATCTTGAAATTTCTTTGGATAAGCTCATGCCGGTTATTGAAAATCTTACCGAAGAGGGTGAAGTTTATGAAGCTATAGCTGATCACTATAAGTCTATCAATGGTTGA 942 0.4087 MIFTVITPNREVLNSVYACIWILQVTTKKKKHEFEFNRVRRQHSLLLSLNLPPSLSPSLISIYLPNRDAQTMLPLTVKQIYDASDPSSDGEINLFVNGADLTNFTLVGKVCNKAAGITADVITFVLDDGTGRIHLFMYMHAGFTELLKQTRTFITRDGMYVRLYGQLITYQSKKILTVFSFRPVTYFNEITSHFIDCIYVHLYNSKKQAYIFCKFHTSVHILNSTPIAPSKGYQADQAILPPNQFSGQKSVGAMVLDFLLHPANRSRNEGVHRDLIAQHLEISLDKLMPVIENLTEEGEVYEAIADHYKSING 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2022 313 Gene3D - 242 312 IPR036388 -
Aed6g2022 313 CDD RPA2_DBD_D 103 202 - -
Aed6g2022 313 Pfam Replication protein A C terminal 228 306 IPR014892 -
Aed6g2022 313 SUPERFAMILY Nucleic acid-binding proteins 72 205 IPR012340 -
Aed6g2022 313 PANTHER REPLICATION PROTEIN A-RELATED 66 311 IPR040260 -
Aed6g2022 313 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 66 311 - -
Aed6g2022 313 Gene3D - 66 206 IPR012340 -
Aed6g2022 313 SUPERFAMILY "Winged helix" DNA-binding domain 247 311 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2022 Aed-Chr6 22997235 22999913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2022 49 311 Core DNA Replication Machinery Family AT2G24490 37.778 1.45e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2022 K10739 - gmx:100782819 263.462