Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2002 ATGGCATCTTCTCCACGAGAATTCATATTCCGCTCCCCACTCCCCGATATTCCCATCCCCACACACCTCCCTCTCTATTCTTACTGCTTTCAAAACTTGTCTCAGTTTCACGACCGTCCATGCCTCATCGACGGTGACTCCGGCGAGATCCTCACCTATTCTGACGTCGACCTCGCCGCCCGCCGCATCTCCGCCGGCCTCCACAAAATCGGCATCCGCCAGGGTGACGTCGTCATGCTCGTCCTCCGAAACTGCTCTCAGTTCGCCCTCGCCTTCCTCGGCGCCACCAACCTCGGCGCCGTCGTCACCACCGCCAACCCCTTCTACACTCCGGCGGAGCTCGCGAAACAAGCCACGGCCACGAAAACCAGGCTGGTCATAACGCAATCCGCGCAGGTTGAGAAAATCAAGAGCTTCGCGGACAGCAGCAGCGATGTCATGGTGATGTGCATTGATGATGATTATTTTTCCTCGGAAAACGACGGCGTTTTGCGTTTCTCAACGCTCGCTAACGCTGATGAAACGGAAGCACCTGCCGTTAAGATTAACCCTGACGACCTTGTGGCGCTTCCGTTTTCTTCTGGCACGTCGGGGCTCCCCAAGGGCGTTATGTTATCGCATAAGAACTTGGTGACCACGATAGCGCAGTTAGTTGACGGCGAAAACCCGCACCAGTACACGCACAGCGAGGACGTGCTACTCTGTGTGCTGCCCATGTTTCATATCTATGCGCTGAATTCTATTTTGCTCTGCGGGATTCGTTCCGGTGCGGCTGTGCTTATTGTGCAGAAGTTTGAGATCACCACGCTGTTGGAGCTCATCGAGAAGTACAAGGTCACGGTTGCGTCGTTTGTGCCTCCCATCGTTTTGGCGCTGGTTAAGAGCGGCGAGACTCATCGCTACGATCTGTCGTCTATTCGCGCTGTTGTCACTGGCGCGGCACCTTTGGGAGGGGAACTTCAAGAAGCCGTGAAATCTCGGCTACCCCACGCCACTTTTGGACAGGGATATGGGATGACAGAAGCAGGACCACTTGCCATTAGCATGGCATTTGCAAAAGAACCTTTAAAGATAAAACCAGGTGCTTGCGGAACCGTTGTGAGAAACGCCGAGATGAAAATCGTGGATACAGAAACCGGTGATTCCCTTCCAAAAAACAAACCCGGTGAAATTTGCATCAGAGGCACAAAGGTTATGAAAGGATATCTAAATGACCCAGAGGCTACTGAGAGAACTATAGACAAAGAAGGATGGCTACACACAGGAGATATTGGTTTCATCGATGATGATGACGAACTCTTCATTGTTGATCGGTTAAAGGAATTGATCAAATACAAAGGATTTCAAGTAGCTCCTGCTGAGCTTGAAGCATTGTTGATTGCCCACCCAAACATTTCTGATGCTGCTGTTGTAGGCATGAAAGATGAAGCTGCAGGAGAAATTCCAGTTGCATTTGTTGTAAGGTCAAATGGTTCTGAGATCACCGAGGATGAAATCAAGAAATACATTTCACAACAGGTGGTATTTTACAAGAGAATCGGTAGAGTTTTCTTCACGGACTCTATTCCCAAAGCACCCTCAGGCAAAATTCTGCGAAAGGTGTTAACTGCAAGACTTAACGAAGGTTTAGTGGTGGCTAATTAG 1644 0.503 MASSPREFIFRSPLPDIPIPTHLPLYSYCFQNLSQFHDRPCLIDGDSGEILTYSDVDLAARRISAGLHKIGIRQGDVVMLVLRNCSQFALAFLGATNLGAVVTTANPFYTPAELAKQATATKTRLVITQSAQVEKIKSFADSSSDVMVMCIDDDYFSSENDGVLRFSTLANADETEAPAVKINPDDLVALPFSSGTSGLPKGVMLSHKNLVTTIAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRSGAAVLIVQKFEITTLLELIEKYKVTVASFVPPIVLALVKSGETHRYDLSSIRAVVTGAAPLGGELQEAVKSRLPHATFGQGYGMTEAGPLAISMAFAKEPLKIKPGACGTVVRNAEMKIVDTETGDSLPKNKPGEICIRGTKVMKGYLNDPEATERTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISDAAVVGMKDEAAGEIPVAFVVRSNGSEITEDEIKKYISQQVVFYKRIGRVFFTDSIPKAPSGKILRKVLTARLNEGLVVAN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2002 547 Pfam AMP-binding enzyme 32 445 IPR000873 -
Aed6g2002 547 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Aed6g2002 547 Gene3D - 440 543 IPR045851 -
Aed6g2002 547 Gene3D - 3 439 IPR042099 -
Aed6g2002 547 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
Aed6g2002 547 CDD 4CL 19 535 - -
Aed6g2002 547 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Aed6g2002 547 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 539 - -
Aed6g2002 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2002 Aed-Chr6 22874207 22880083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2002 7 507 Monolignol Biosynthesis Gene Families AT1G51680 65.217 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2002 K01904 - gmx:548034 1023.85