Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2001 ATGAATTTCCACAATACCAACAATACTTCTCTTCACCTAATTAGCCAAGCAGATGATCATGTGAATCATCATCTGAACCTAGATCTTCTTCTTGAGCCTTCTTCTTCTTCTTCATCTTCTCCTTCACCTATTAGTCCGGTTGAGCCGCGTATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTCAACCATGCAATCGGAGCAAAGATCAAACTTCACTGCTTCTTCACACCATCTTAGTCGTGCTCTTGGGGACCAAGGACAAAGTTATGTGAGGCTTGGTGGAAGAAATGAGGAAGGAGTTTCTTCTTGGTCAAGGGGTTACACTGCTGAACATGTTCAGGAGGATATTGGCCAACTTGACTTGTCCTTAAGGCTATGA 462 0.4437 MNFHNTNNTSLHLISQADDHVNHHLNLDLLLEPSSSSSSSPSPISPVEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSTMQSEQRSNFTASSHHLSRALGDQGQSYVRLGGRNEEGVSSWSRGYTAEHVQEDIGQLDLSLRL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2001 153 Gene3D Classic Zinc Finger 39 108 - -
Aed6g2001 153 MobiDBLite consensus disorder prediction 83 106 - -
Aed6g2001 153 PANTHER BNAC02G44440D PROTEIN 7 153 - -
Aed6g2001 153 MobiDBLite consensus disorder prediction 85 106 - -
Aed6g2001 153 SUPERFAMILY beta-beta-alpha zinc fingers 49 79 IPR036236 -
Aed6g2001 153 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Aed6g2001 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Aed6g2001 153 PANTHER ZINC FINGER PROTEIN JAGGED 7 153 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2001 Aed-Chr6 22866471 22866932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2001 8 153 C2H2 Transcription Factor Family AT5G57520 50.000 1.67e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed6g2001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2001 - - vra:106768043 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2001 6 22866471 22866932 Aed6g2001 6 22866471 22866932 ECH