Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1989 ATGCAGAACATATCGTGTGGTGGGGATAGTAAAACGAAGGAAGGGATGTGGAGTTCACCTTCAATTGCAGCAGCAGCCTCCTCTTCTGAGGAATCATCGTCGTCGTCGTCGTTCTCTCTGTTCAATTTCTCTTCTGGAAATCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCCCTGACGACACTCCTTCTACTCTTCCAGTTGGACGGAAGGCTCTCGTTTGTGTTGTGGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGCTCCTTCATTCACCACATGCTACAGATACACATTCTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGCTTTGACCACCAAGACTCCACCGACACCTTCTACAAGCACTACAATGGCCGCCGTTTCTCTTCTCTCGAGGTTGAGCTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGCTCCATTGAACACGCACAAGCACAACCCTCCAATGCTACTTCAACTGAACAGCCTACTTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTTTATGCAACCATTCCTTCCATTGCTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGCTATGTTGGCTGCGGAAGATACAAGGGAGGACATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAACTGAACACTCACTGTGCACACACAGACATTGGATGTGGAAGTTGCAGCTGTCAAGATAGTGCCATGAGTGAGGCTATACTTAGTAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAATCAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTGAGAAAGAAAAGAAATTCCTCGATGATCTTAATGAGAATCTTCTGAAAAATGAGGACATTTGGAAATCAAAGACACTTGAGATTGAAGAGAGGGAGAAAAAAGCTATGAGAGTGATGGATGATAAAGTATCTGACCTGGAAAAACAGCTTGGAGATCTCATGGTTTGTCTTGAGGGTCCAGTTTCAGATGAGATTAAGGAAGGGATTGTCGTCAACTAG 1395 0.4315 MQNISCGGDSKTKEGMWSSPSIAAAASSSEESSSSSSFSLFNFSSGNPRIEETRGLMHLFPDDTPSTLPVGRKALVCVVGVPNHMTYADFCQFCGSFIHHMLQIHILRMDGMEDQYSVLIRFDHQDSTDTFYKHYNGRRFSSLEVELCRVLFTLDVQYTGSIEHAQAQPSNATSTEQPTCPVCLERLDQDTGGILTTLCNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCAHTDIGCGSCSCQDSAMSEAILSSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEESEIKISKAVQKAISLKQQKIQSKIDRCEKEKKFLDDLNENLLKNEDIWKSKTLEIEEREKKAMRVMDDKVSDLEKQLGDLMVCLEGPVSDEIKEGIVVN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1989 464 MobiDBLite consensus disorder prediction 1 35 - -
Aed6g1989 464 PANTHER BRCA1-ASSOCIATED PROTEIN 24 462 - -
Aed6g1989 464 SMART Zf_UBP_1 230 279 IPR001607 GO:0008270
Aed6g1989 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 304 IPR013083 -
Aed6g1989 464 SUPERFAMILY RING/U-box 196 295 - -
Aed6g1989 464 SUPERFAMILY RING/U-box 172 220 - -
Aed6g1989 464 ProSiteProfiles Zinc finger UBP-type profile. 214 307 IPR001607 GO:0008270
Aed6g1989 464 ProSiteProfiles Zinc finger RING-type profile. 180 220 IPR001841 -
Aed6g1989 464 CDD RING-H2_BRAP2 178 221 - -
Aed6g1989 464 Coils Coil 389 409 - -
Aed6g1989 464 Pfam BRCA1-associated protein 2 69 165 IPR011422 -
Aed6g1989 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 221 IPR013083 -
Aed6g1989 464 Pfam Ring finger domain 179 220 IPR001841 -
Aed6g1989 464 Pfam Zn-finger in ubiquitin-hydrolases and other protein 231 290 IPR001607 GO:0008270
Aed6g1989 464 SMART ring_2 180 219 IPR001841 -
Aed6g1989 464 Coils Coil 345 383 - -
Aed6g1989 464 CDD RRM_BRAP2_like 76 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1989 Aed-Chr6 22776259 22779303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1989 176 220 C3H Transcription Factor Family AT1G72220 46.809 5.35e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1989 K10632 - gmx:100794688 784.637