Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1981 ATGGGAATTGAAAGAGGAGGCTTGAAGGGCTTCAGGAGCGGCTGGACCGTGCCGCCGAAGCCATGCGACTCTTGTAAGTTGGATTCGGCGGCGCTTTTCTGCCGCCCTGACTCTGCTTTTCTCTGCATCGCCTGCGATTCTAAGATTCACTGCGCGAATAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAGGCACCAGCTGCTGTCACGTGCAAGGCTGACGCGGCAGCCCTCTGCATCACGTGCGACTCAGACATCCACTCCGCGAACCCCCTGGCGCAGCGCCACGAGCGCGTCCCCGTGGAGCCCTTCTTCGACTCCGCCGAGTCCATCGTGAAAGCCTCCACCGCCGCCTCGTTCGGGTTCATCGTCCCCTCAGACGACGGTGCCGCCGCCTTCGCACCCGACGACGCCGCGTGGCTCATCCCGAACCCCAATTTCGGGTCGAAACTGATGGAAGCCCCCGAGATGAAGTCGAAGGAGATATTCTTCTCAGAAATAGACCCCTTCCTCGAATTCGATTACTCAAACTCGTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTGGTTCCAGTTCAAACCAAACCCTTACTCGCCCCTCCCCTCATCAATAATAATCACCACCAATCAGAGACTTGCTTCGACATCGATTTTTGCCGCTCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCAGATGGGAACACGGTGTCGGAATTGTCGTACTCTTTTGGACGGAACAGTTCGGAATCGAGTGGGATTGTGGTGTCTGGGGGGCAAAGTGCGAGTGCGAGTGCGACGCAATTGTGTGGGATGGATCGCGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGGAAATTCGAGAAGACGATTCGATACGCATCGCGAAAGGCATATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGATGTGGATGTGGAGCGTCTCTATAGCCCTGGTCCTGCGGCGCTCATGCTCGACACTCCATACGGCGTCGTACCATCGTTTTAG 1122 0.5686 MGIERGGLKGFRSGWTVPPKPCDSCKLDSAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASTAASFGFIVPSDDGAAAFAPDDAAWLIPNPNFGSKLMEAPEMKSKEIFFSEIDPFLEFDYSNSFQNNNSAGNDSVVPVQTKPLLAPPLINNNHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSELSYSFGRNSSESSGIVVSGGQSASASATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDVDVERLYSPGPAALMLDTPYGVVPSF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1981 373 Pfam CCT motif 297 339 IPR010402 GO:0005515
Aed6g1981 373 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Aed6g1981 373 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Aed6g1981 373 SMART bboxneu5 65 107 IPR000315 GO:0008270
Aed6g1981 373 SMART bboxneu5 17 64 IPR000315 GO:0008270
Aed6g1981 373 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Aed6g1981 373 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 373 - -
Aed6g1981 373 CDD Bbox1_BBX-like 65 107 - -
Aed6g1981 373 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Aed6g1981 373 CDD Bbox1_BBX-like 21 64 - -
Aed6g1981 373 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 373 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1981 Aed-Chr6 22718509 22720451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1981 1 373 C2C2-CO-like Transcription Factor Family AT5G57660 56.477 5.88e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed6g1981 zf-B_box 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1981 - - gmx:100805693 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1981 6 22718509 22720451 Aed6g1981 6 22718509 22720451 ECH