Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1980 ATGGTACTTCTTCCCTCCCCTGCCAAAATACTAGTTGGCCTCTCCTTAGACCCAGAGGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGCTCTAGCCAATCCAAGTGACACCATTGTGGCTGTGCATGTGCTTGTTGCTGCCGATAAGAAGAAGCGTGCATCAGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAATTCCACAGTTGGTGAAGGCTTAGTGGAGGAAGCCAAGTCCATCAATGCTGATTTTCTTCTTATTCGTGGCTCAAGAAACCGAACAAATAAGTATGAATTGAGTGATGTAGTAATAGTCATTAGTTTTCTTTATGAAGATCAGGCACGACAAACCCAGTTTATTTTATTTTCTTTCTTAGAATTGGAACTTCGAAAGGAATTACCAAGTACTGCTTTGAGCATGCACATGAAGGGTGTACAATGGTCTCAGTTGGGAGACGTACAACGGCAGATCAAAGTGCAAATTCAAACTCAACACGTTTTCAAGGTAACTCAGATACATTGTATAGCAGATAAAAAACAAGCAAGTTCAAGATGGTTCAAGAAGGATAACCAATGTAACAAGGCTACCTCCCCTATTCTGGAGGATTATATCTCAGGAAACAAGACTCAGAACCGTTCACCAAGAACAGTGCTAGATGGTCTAGAGGGACAATCGAACAGCACTGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACCTACACCCCATCATCGGATTCTAAGTTTAAGAGGCGATCCAAAACAAGAAAACCACAGTTCCCATTCAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGATAAACTTGAACATGTCCAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCAAATGCTACCGAAGACTTCCACCAAGATAATTTGGTTGGGCGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAGATGGAAGAACCATTGCTGTGAAGAGGTTGGCGAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAGTTGGGTGTTATTGGACATGTCTGCCATCCTAATACTGCAACATTAGTGGGATGCTGCATTGAAAATGGGCTTTATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCAACTGCATTGCATGGTAGTATTGTTTGTTATATAACCGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGAGTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCACCAGAATACTTTATGCATGGGATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAGCAAAACCTTCTCTTATGGGCAAAGCCTCTTATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGATTGGAAGGTAAATATGATGGAGAGCAACTGTATAGGGTAGTGCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGTGAGGTGTTAGAGCTGCTAAGCAGTGGCCAAGAGAGTAGTGAGGTTGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGATATTTCTTTGGAGGATTACTTGTGA 1800 0.4261 MVLLPSPAKILVGLSLDPEDSKELLSWAIRALANPSDTIVAVHVLVAADKKKRASVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEEAKSINADFLLIRGSRNRTNKYELSDVVIVISFLYEDQARQTQFILFSFLELELRKELPSTALSMHMKGVQWSQLGDVQRQIKVQIQTQHVFKVTQIHCIADKKQASSRWFKKDNQCNKATSPILEDYISGNKTQNRSPRTVLDGLEGQSNSTEDDTFSTRVSSTTYTPSSDSKFKRRSKTRKPQFPFRFIVSFLASPFRRINLNMSKNEKRQPLLKCFSYEQISNATEDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGSIVCYITDFGLAKWLPNKWSHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRLEGKYDGEQLYRVVLTASYCVRQTATWRPPMSEVLELLSSGQESSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1980 599 ProSiteProfiles Protein kinase domain profile. 335 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1980 599 Pfam Protein tyrosine and serine/threonine kinase 425 552 IPR001245 GO:0004672|GO:0006468
Aed6g1980 599 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 123 - -
Aed6g1980 599 PANTHER OS08G0249100 PROTEIN 7 423 - -
Aed6g1980 599 Pfam Universal stress protein family 9 122 IPR006016 -
Aed6g1980 599 MobiDBLite consensus disorder prediction 233 284 - -
Aed6g1980 599 SUPERFAMILY Protein kinase-like (PK-like) 319 557 IPR011009 -
Aed6g1980 599 MobiDBLite consensus disorder prediction 233 276 - -
Aed6g1980 599 PANTHER OS08G0249100 PROTEIN 427 589 - -
Aed6g1980 599 Pfam Protein kinase domain 335 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1980 599 Gene3D Transferase(Phosphotransferase) domain 1 413 572 - -
Aed6g1980 599 Gene3D HUPs 5 133 IPR014729 -
Aed6g1980 599 Gene3D Phosphorylase Kinase; domain 1 300 411 - -
Aed6g1980 599 CDD USP_Like 9 123 - -
Aed6g1980 599 PANTHER OS08G0249100 PROTEIN 427 589 - -
Aed6g1980 599 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Aed6g1980 599 PANTHER OS08G0249100 PROTEIN 7 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1980 Aed-Chr6 22711581 22714386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1980 323 595 Trihelix Transcription Factor Family AT1G70460 32.641 5.00e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aed6g1980 PK_Tyr_Ser-Thr 2.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1980 - - gmx:100787158 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1980 6 22711581 22714386 Aed6g1980 6 22711581 22714386 ECH