Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1963 ATGGGTAGGAGTGATGTTGTCTTTGTGCCTCCACCAGAACAGTCACCATATTTTCTGTCACAGCCAAACCCACCACCTTTTCCAGCCACCGTTCGATCTGATAGTTTCAGTTTGAACGATAGGGCCTTGAAGGTCAGTCCAAGCATCCTTCTGATAATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTCTTCTGCACCTACTGGTTAGATTCCTTTGGAGACCCCAAAGTAGAGAGCCTGATGATTTGGACAATGTCACTGCTCTCCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTGCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACTTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGAATTCTCTGCAAGCAACGCATGTTCCCCTATTGTTCTTGTCCTAGAATCTGGGAGTGAGACCTCCAGGGAGATTGTTCCTGAAAGAGATGCTGCTGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACTAATTCCCGCCTTGGTTGCCGTGGAGATAGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTGTTAAGTGAAATTCCTGATCCAACAGCTGTGCCTAATGGTGTAGAGAAAGTGGTTACTGTTAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGGAGGTGAGGGTGGGGAAGGGAGTAGTAGTAGTAGTACAAACAATGTGGATGCAAGAAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTTATGGATGAGAGTTCCTCATTGCAAGTACCCATCAGAACCCCTATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACCCCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATAGTTGAGGATGATGTTGCTAGTACTGGGGCTACAACTGGAAGTACAACTTGTAATGGGAATAGTAGTGCTGCCATTGGAAGGAACAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAATAAGGATAAGCCAAATGCAGTGGCGGATTCGTCTAGAAGGGCTGTGTCTTTTCGCTTCCCAGCCAAGTCTAGTGTTGTTGCTGCTTCGGGTAGTGCTGATGATGATTTGAAGGGCAAGAATTTCAAGTTTGATACACGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGTGAGTTCGATTATGATGAGGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAACCTAGGGCGCCATCTTTTGCTAGAAGAACTTTGCTTTGGCTCACCGGAGGAAGACAGAATAATAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1572 0.4561 MGRSDVVFVPPPEQSPYFLSQPNPPPFPATVRSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSASNACSPIVLVLESGSETSREIVPERDAAAAVGRTSSVMTTNSRLGCRGDRDSEFGSTRVDLKSGELLLSEIPDPTAVPNGVEKVVTVKLGKFRSVDGGGGGEGGEGSSSSSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIVEDDVASTGATTGSTTCNGNSSAAIGRNRKESFSISKIWLRGNKDKPNAVADSSRRAVSFRFPAKSSVVAASGSADDDLKGKNFKFDTRSTISEMDIGKWENGGGSEFDYDEENQSCYSMDSSQPRAPSFARRTLLWLTGGRQNNNKVVHSASNL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1963 523 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Aed6g1963 523 SUPERFAMILY RING/U-box 118 180 - -
Aed6g1963 523 Pfam Ring finger domain 130 173 IPR001841 -
Aed6g1963 523 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 10 421 - -
Aed6g1963 523 CDD RING-H2_PA-TM-RING 130 173 - -
Aed6g1963 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 421 - -
Aed6g1963 523 SMART ring_2 131 172 IPR001841 -
Aed6g1963 523 MobiDBLite consensus disorder prediction 277 296 - -
Aed6g1963 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 178 IPR013083 -
Aed6g1963 523 MobiDBLite consensus disorder prediction 325 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1963 Aed-Chr6 22566204 22567775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1963 37 523 C3H Transcription Factor Family AT2G18650 45.709 7.62e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1963 - - gmx:100797283 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1963 6 22566204 22567775 Aed6g1963 6 22566204 22567775 ECH