Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1934 ATGGCCAAAAAATCACAGCTGCGTAGTGCCCAGAAAAACAATGCTAGCAATGACGACAATAATCTTAACACGACCAACACTGTGACCACCAAAGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCACCTCAACGCAGTTCAATATACCGAGGAGTCACTAGGCACCGATGGACGGGGCGATACGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAATCACAGAACAAAAAAGGACGACAAGGCGCTTATGACAATGAAGAGGCAGCAGCACATGCTTATGATCTAGCAGCACTCAAATACTGGGGTCAAGATACCATTCTTAATTTCCCGTTATCAAACTACCTGAACGAACTGAAAGAAATGGAGAGTCAATCACGGGAGGAGTATATCGGATCGCTGAGGAGGAAAAGCAGTGGTTTTTCTCGAGGAATTTCTAAATACAGAGGTGTTGCAAGACATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTCGGAACCTATGCTACCCAAGAAGAAGCTGCTACTGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTTGATCTCAGCCGTTACATTAAGTGGCTTAATCCTAATAACACCAACAACATTAATGACCGGATTATTAGTACTAATCACACTCACATAAATAACAATAACAATTGCACTAATAACAGCAATAACTTCACCCCAAATAACCCTGATCAAGAACAAGAAGTTAGCTTCTTCAATAATAATGTTGTGGAAGAAGAAGCCACGTTAGTGCCACATCAGCAGCCTCGTCCAGCAAGTGCCACGTCAGCATTGGAGCTTCTACTTCAGTCAACCAAGTTCAAGGAAATGATGGAGATGACGTCATCTGTGGCGAATCTTTCAACACAGATGGAGTCTGAGTTGCCTCAGTGCACATTTCCTGATCACATTCAAACATACTTTGAGTATGAAGAAGATTCCAATAGATACGAGGAAGGGGATAATCTCATGTTCAAATTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCAATGTGACGAGTTCGAGAGTTCATGA 1107 0.4318 MAKKSQLRSAQKNNASNDDNNLNTTNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMESQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLNPNNTNNINDRIISTNHTHINNNNNCTNNSNNFTPNNPDQEQEVSFFNNNVVEEEATLVPHQQPRPASATSALELLLQSTKFKEMMEMTSSVANLSTQMESELPQCTFPDHIQTYFEYEEDSNRYEEGDNLMFKFNEFSSIVPFYQCDEFESS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1934 368 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 Pfam AP2 domain 50 105 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 Gene3D AP2/ERF domain 50 115 IPR036955 GO:0003700|GO:0006355
Aed6g1934 368 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Aed6g1934 368 MobiDBLite consensus disorder prediction 1 33 - -
Aed6g1934 368 SUPERFAMILY DNA-binding domain 49 115 IPR016177 GO:0003677
Aed6g1934 368 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Aed6g1934 368 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 349 - -
Aed6g1934 368 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 MobiDBLite consensus disorder prediction 1 53 - -
Aed6g1934 368 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 349 - -
Aed6g1934 368 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Aed6g1934 368 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1934 Aed-Chr6 22381552 22384529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1934 46 211 AP2-EREBP Transcription Factor Family AT5G57390 71.598 6.49e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aed6g1934 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1934 K09285 - gmx:100790871 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1934 6 22381552 22384529 Aed6g1934 6 22381552 22384529 ECH