Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1928 ATGTGTTTGTTTAGATTAACAGTGTTTCTATTTTTCATTCTGGCCACTGTTCAATCTAGAGTACTTCATGCGAAAGAAAATGCTGGCCATGGCATCGTGAATGGAAAAAAATCACTTATTTCATTCATGTCAGGCATTGTTTCTGACCCTCAAAACGCTTTGGAGAGTTGGAAGGCACCGGGTGTTGATGTTTGTGATTGGTCAGGTGTAAGATGCAACAATGCAAGTGACATGATCATTGAGCTTGATCTCAGTGGAAGGTCACTAGGAGGGAACATTTCCCCTGCTCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAATTTTCTGGTGGGTCACATTCCAAAGGAACTAGGCCATTTGGTTCAGCTTGGACAACTCAGTTTGTCTGGGAATTTTCTTGAAGGGCACATTCCATCTGAGTTTGGTTCGCTTCACAACTTGTACTACCTTGACATAGGAAGCAATCATCTTGAGGGAGAGATTCCATCATCACTTTTCTGTAATGGGACTTCACTGAGATATGTAGACCTCTCTAACAATTCCTTAGGAGGACAAATCCCCTTCAACAAAGAGTGTATCCTTAAAGAGCTCAGGTTCCTGTTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCTTTGGCTCTTTCAAAGTCTACCAAGCTTAAATGGCTTGATTTGGAGTTGAATATGTTGAGTGGACACCTTCCTTCTAAGATTGTAAGTAATTGGCCACAACTGCAATACCTCTACTTGTCATATAACAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCACACTTTCAAGAACTCGAATTGGCGGGAAACAATCTTGGTGGGAAGCTGCCTCATAATATTGATGATCTTCCCTCCAGCCTGCAACAACTTCACCTAGAAAAAAATCTCATATATGGCTCTATACCTCCACAAATTGGCAACCTTGTCAACTTGACTTTCTTGAAGTTGTCCAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCAGCAACATGAATAGGCTAGAAAGAATTTATTTGTCAAATAATTCACTATCTGGTGATATTCCTTCAACCCTTGGTGACATCAAGCATCTGGGACTTCTAGACTTGGCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAAATCTCTCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATCCCACCAAGTCTAGGAAAATGTGTCAACTTGGAGATTTTAGACTTATCTCACAACAAGATAACTGGGTTGATTCCTGCAGAAGTAGCAGCCTTGAATAGCTTGAAACTATACCTGAATTTATCAAATAATAACTTACATGGTCCTTTGCCATTAGAACTCAGCAAAATGGACATGGTGCTTGCTATTGATGTATCCATGAATAATCTCTCTGGCAGCATCCCTCCACAGCTAGAAAGTTGCACAGCACTGGAGTACCTCAATCTCTCTGGCAATTCCTTTGAAGGCCCTCTCCCTTATTCGTTAGGCAAATTGCTCTATATTCGAGCACTTGATGTGTCCTCAAATCAATTGACTGGGAAAATACCAGAGTCCATGCAGTTGTCTTCCTCTCTCAAGGAACTTAATTTCTCTTTCAACAAATTCTCAGGGAAAGTCTCAAACAAGGGAGCATTTTCAAATCTTACCATTGACTCTTTCCTGGGAAATGATGGTCTCTGTGGCCGGTTCAATGGCATGCAACATTGTCACGAGAAACGTGGTTATCATTTGGTGTTCTTGTTGATTCCTGTGTTACTATTTGGTACCCCTCTCCTATGCATGCTTTTTAGATACTCCATGGTAATGTTCAAGTCAAAAGTGAGAAATCGATTTGCAATTGTTAGAAGAGGTGATTTGGAGGATGTAGAAGAGGGAAGAAAAGCCCACAAGTACCCAAGAATTTCATATAGACAACTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCTTAATTGGTTCGGGGCGGTTTGGACAAGTCTACGAGGGAATGCTTCAAGATAATACAAGAGTAGCTGTGAAGGTATTGGATACAACACATGGTGAGATTTCAAGGAGCTTTAGAAGGGAATATCAAATCCTGAAAAAGATAAGGCACAGGAATTTAATAAGGATCATCACAATTTGTTGTAGGCCAGAATTTAATGCCCTTGTTTTTCCCTTGATGCCAAATGAATACGGAATGGGGAAAGATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTACTTGTGTTGGAGATGGTCTCAGGTAAACGCCCCACAGATGTTCCCATCCATGAAGGTTCAAGCTTGTGTGATTGGATTAAGAGACAATACACACACTCACATCAACTTGAAAACTTTCTTGAACAAGCACTGCAAAGGTTCTCTGATCCTTATGGGCCAAACCATCGTAACCAAATTTTGAAAGATGTGATTTTGGAACTCGTCGAGTTGGGACTAGTCTGCACACAGCACAATCCTTCAACAAGACCAACCATGCACGATATAGCCCAAGAAATTGAGAAGTTGAAGGACTATCTCACTAAGTCAAACTTGCCCCCTTATCAATAG 2625 0.4095 MCLFRLTVFLFFILATVQSRVLHAKENAGHGIVNGKKSLISFMSGIVSDPQNALESWKAPGVDVCDWSGVRCNNASDMIIELDLSGRSLGGNISPALANISSLQILDLSGNFLVGHIPKELGHLVQLGQLSLSGNFLEGHIPSEFGSLHNLYYLDIGSNHLEGEIPSSLFCNGTSLRYVDLSNNSLGGQIPFNKECILKELRFLLLWSNKLVGQVPLALSKSTKLKWLDLELNMLSGHLPSKIVSNWPQLQYLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHNIDDLPSSLQQLHLEKNLIYGSIPPQIGNLVNLTFLKLSSNLINGSIPPSLSNMNRLERIYLSNNSLSGDIPSTLGDIKHLGLLDLARNKLSGSIPDSFANLSQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGLIPAEVAALNSLKLYLNLSNNNLHGPLPLELSKMDMVLAIDVSMNNLSGSIPPQLESCTALEYLNLSGNSFEGPLPYSLGKLLYIRALDVSSNQLTGKIPESMQLSSSLKELNFSFNKFSGKVSNKGAFSNLTIDSFLGNDGLCGRFNGMQHCHEKRGYHLVFLLIPVLLFGTPLLCMLFRYSMVMFKSKVRNRFAIVRRGDLEDVEEGRKAHKYPRISYRQLREATGGFSASSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRREYQILKKIRHRNLIRIITICCRPEFNALVFPLMPNEYGMGKDASTEGDVYSFGVLVLEMVSGKRPTDVPIHEGSSLCDWIKRQYTHSHQLENFLEQALQRFSDPYGPNHRNQILKDVILELVELGLVCTQHNPSTRPTMHDIAQEIEKLKDYLTKSNLPPYQ 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1928 874 Gene3D Phosphorylase Kinase; domain 1 641 738 - -
Aed6g1928 874 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Aed6g1928 874 PANTHER OS04G0122200 PROTEIN 747 862 - -
Aed6g1928 874 PANTHER OS04G0122200 PROTEIN 25 747 - -
Aed6g1928 874 Gene3D Ribonuclease Inhibitor 196 266 IPR032675 -
Aed6g1928 874 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 747 862 - -
Aed6g1928 874 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Aed6g1928 874 SUPERFAMILY RNI-like 81 366 - -
Aed6g1928 874 SUPERFAMILY L domain-like 332 584 - -
Aed6g1928 874 SUPERFAMILY Protein kinase-like (PK-like) 653 865 IPR011009 -
Aed6g1928 874 SMART LRR_typ_2 100 124 IPR003591 -
Aed6g1928 874 SMART LRR_typ_2 328 352 IPR003591 -
Aed6g1928 874 SMART LRR_typ_2 425 447 IPR003591 -
Aed6g1928 874 SMART LRR_typ_2 148 172 IPR003591 -
Aed6g1928 874 SMART LRR_typ_2 376 399 IPR003591 -
Aed6g1928 874 SMART LRR_typ_2 400 424 IPR003591 -
Aed6g1928 874 Gene3D Transferase(Phosphotransferase) domain 1 739 866 - -
Aed6g1928 874 Pfam Protein tyrosine and serine/threonine kinase 672 747 IPR001245 GO:0004672|GO:0006468
Aed6g1928 874 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 25 747 - -
Aed6g1928 874 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Aed6g1928 874 Pfam Leucine rich repeat 354 413 IPR001611 GO:0005515
Aed6g1928 874 ProSiteProfiles Leucine-rich repeat profile. 426 447 IPR001611 GO:0005515
Aed6g1928 874 Gene3D Ribonuclease Inhibitor 267 599 IPR032675 -
Aed6g1928 874 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515
Aed6g1928 874 Pfam Leucine Rich Repeat 426 444 IPR001611 GO:0005515
Aed6g1928 874 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515
Aed6g1928 874 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Aed6g1928 874 ProSiteProfiles Protein kinase domain profile. 669 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1928 Aed-Chr6 22328409 22331477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1928 748 862 Receptor kinase-like Gene Family AT5G20480 29.565 7.92e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aed6g1928 PK_Tyr_Ser-Thr 1.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1928 - - gmx:100792446 1370.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1928 6 22328409 22331477 Aed6g1928 6 22328409 22331477 ECH