Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1924 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAACTCGTTGTCATTCATGGCCACGAAGAGGTGTGTGAGATATGTGGCGATGATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGCGTGCCGACCATGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAGGACGTGGATGATATTGAACATGAATTCAACATTGAGGATCAGAACAGGCATAACCATTCTGCTGATTCCATGCTACATGGAAAGATGAGCTACGGAAGAGGTCCTGAAGATGATGAGAATTCTCAATTCCCAGTTGTTATTGCTGGTGGTCGCTCTCGCCCTATGTTAGTTTCTTCACTGCATAATCGAGTGCACTCATATCCCGCCTCTGATCCTAGTAAGACTATGTGGCATGCTGTGATCAAAGCAGGAAATGGAAAATGGGATGAAGCCAACAAAGAGGACAGAATGGATGACTGGAAGTTGCAACAAGGCAATTTGGGGCCTGAACCTGATGAAGATCCTGATGCAGCCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCAAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCACGGCTCGTTATCCTTGCCTTCTTCCTCAGATATAGGCTTATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCACTCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTGGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCAGTTGCTAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACTTTTGAATGCCTATCAGAAACTGCAGAGTTTGCCAGGAAGTGGGTACCGTTCTGCAAGAAATTTTCGATAGAACCTCGAGCACCAGAGATGTACTTTAGTGAGAAAATTGATTACCTCAAGGATAAGGTGCAGCCCACTTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGGTCAATGCACTTGTTGCAAAAGCTCAGAAGGTTCCTCAAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATGCTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCTAGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTAGAGTTTTTTTTAGCAGTTTTTATTCGGGTCTCTGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAATAGCAAGGCTGCTCGAGAGGCCATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATCGATAGGCATGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATATGGATACAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGTTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGATGCAAATGGAGAGGCAGCAAACCTAAGAGGAATGGATGATGACAAAGAGGTGCTGATGTCACAGATGAATTTTGAGAAGAAATTTGGACAATCATCTATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTGCAAGTCCAGCAAGCCAACTTAAAGAAGCTATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATTTATGGGTCGATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGCGGTTGGAGGTCCATTTATTGCATGCCAAAGAGAGCAGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTCGGCTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTACAAGGAAGGAAGGCTGAAGTGGCTCGAGCGATTCGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTATTCCTGCTGTCTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAACAATTTTGGGTCATTGGTGGTGTGTCAGCACACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAAGAATTTTCAGAACTATACACCTTTAAGTGGACTACTCTCTTGATTCCTCCAACCACAATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTCCATTTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATTTGGTCAGTACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTCTTAAAAACTAAGGGACCTGATACCAAGCTATGTGGACTCAACTGCTGA 3090 0.4434 MEASAGLVAGSHNRNELVVIHGHEEVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDQNRHNHSADSMLHGKMSYGRGPEDDENSQFPVVIAGGRSRPMLVSSLHNRVHSYPASDPSKTMWHAVIKAGNGKWDEANKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVAKISCYISDDGASMCTFECLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVEFFLAVFIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKVKYEGNDANGEAANLRGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSASPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGRLKWLERFAYANTTVYPFTSIPLVAYCIIPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFSELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGLNC 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1924 1029 Coils Coil 411 431 - -
Aed6g1924 1029 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 455 612 IPR029044 -
Aed6g1924 1029 CDD mRING-HC-C4C4_CesA_plant 25 75 - -
Aed6g1924 1029 Pfam Cellulose synthase 313 1023 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed6g1924 1029 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 1029 - -
Aed6g1924 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 99 IPR013083 -
Aed6g1924 1029 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 24 1029 - -
Aed6g1924 1029 ProSiteProfiles Zinc finger RING-type profile. 27 73 IPR001841 -
Aed6g1924 1029 Pfam Zinc-binding RING-finger 23 94 IPR027934 -
Aed6g1924 1029 SUPERFAMILY Nucleotide-diphospho-sugar transferases 326 804 IPR029044 -
Aed6g1924 1029 SUPERFAMILY RING/U-box 21 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1924 Aed-Chr6 22298637 22307568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1924 1 1029 Cell Wall Biosynthesis AT5G17420 83.317 0.0 1789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1924 K10999 - gmx:100779834 2008.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1924 6 22298637 22307568 Aed6g1924 6 22298637 22307568 ECH