Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1916 ATGACAGCAGTTTCTTCTCTGGACGCGCTTTCGATACGAGCGTGCAAATATCAGTCGGTCACACACTCACGCCTATTTAATCATACGTTCGAACCCAAAACTACACAGTACACACAAACACTCAAACTGCCCTTGTTTTTCTTTCCCAAAGGCCTTTTCATGGAGTTCAAATATTGTAATAGCCAAATCCGAAGGACACCACTACCATTGGATCCTCTTTCCGCCGTCCCTTACGTCTCCAGATACCCACTACGAGATAACGCTCGCTTTTATTCACGTTCCTTTCAAGGGCGTGAATTTGTGCCAAGTGTTTTTCCAGGTAATGTCGAAGAAGCATTCCAACGAGAGTTGGAGAAAGAAGAGATAAGGAGAGAGATATTTGCTAGCGAGATGGAGTTGGCACGCCGACGAGAGCTAGAAGAGGAAGTAAGGAGAGAAATTGCATCCGAGAGAGTGGTCGGAATCCCAATGCGACGATTGGAGGGTACCGAGTTGAATAACATGTTTGATGGGTCTCTTTTCCATGTTGATAAGCAACATGCTTCTACGCAGAATATCAACGACAAAAAAGTCATTATCTTGCCTAGGCCAAATGTTGATCACTGTGGTGGAAAGCGCAAAACAGTTACACCTACAATTGATAACAAAGAGAGTTCGCACAAGAAAGTTAAGAAGGAGTGGAGTTGCAAGTTGTGTCAGATTACTACAACAAGTGAGAAAGACTTGAATGTTCATATTCAAGGAAAAAAGCATAAGGCTAAAGCATCCATAAGAATTCGAAAAATAGGGATGGATTCAAGATCCGAAGTTCAGACACTTGATCCTCGCTTAACCCTTGCAGACATAGGAAAACTGGAATCTAAAGAAGATGATCAAGATGTCCACAGAAGAAGCAAAGGTTTACCTGGTATGGACAACCAAAATGAAACAAATGCACTAACAAAAAGGAGGAAATTTCAATTTTGGTGTGAGTTTTGTCAAATTGGAACTCGGGCAGAGAGTGTCATGCAGAGCCATAAAAATGGGAAAAAGCACTTACTTAATATCAAAAAAATTAGCCAAAATAATGGTGATATTGCAAATCTTGGATGA 1092 0.413 MTAVSSLDALSIRACKYQSVTHSRLFNHTFEPKTTQYTQTLKLPLFFFPKGLFMEFKYCNSQIRRTPLPLDPLSAVPYVSRYPLRDNARFYSRSFQGREFVPSVFPGNVEEAFQRELEKEEIRREIFASEMELARRRELEEEVRREIASERVVGIPMRRLEGTELNNMFDGSLFHVDKQHASTQNINDKKVIILPRPNVDHCGGKRKTVTPTIDNKESSHKKVKKEWSCKLCQITTTSEKDLNVHIQGKKHKAKASIRIRKIGMDSRSEVQTLDPRLTLADIGKLESKEDDQDVHRRSKGLPGMDNQNETNALTKRRKFQFWCEFCQIGTRAESVMQSHKNGKKHLLNIKKISQNNGDIANLG 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1916 363 SMART ZnF_U1_5 224 258 IPR003604 GO:0003676|GO:0008270
Aed6g1916 363 SMART ZnF_U1_5 318 352 IPR003604 GO:0003676|GO:0008270
Aed6g1916 363 MobiDBLite consensus disorder prediction 287 302 - -
Aed6g1916 363 Gene3D Classic Zinc Finger 302 353 - -
Aed6g1916 363 Gene3D Classic Zinc Finger 205 256 - -
Aed6g1916 363 PANTHER OS06G0651300 PROTEIN 54 353 - -
Aed6g1916 363 SUPERFAMILY beta-beta-alpha zinc fingers 315 352 IPR036236 -
Aed6g1916 363 PANTHER OS06G0651300 PROTEIN-RELATED 54 353 - -
Aed6g1916 363 Pfam Zinc-finger of C2H2 type 321 345 - -
Aed6g1916 363 Pfam Zinc-finger of C2H2 type 227 251 - -
Aed6g1916 363 SMART c2h2final6 321 345 IPR013087 -
Aed6g1916 363 SMART c2h2final6 227 251 IPR013087 -
Aed6g1916 363 MobiDBLite consensus disorder prediction 287 310 - -
Aed6g1916 363 SUPERFAMILY beta-beta-alpha zinc fingers 206 256 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1916 Aed-Chr6 22251256 22253011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1916 226 352 C2H2 Transcription Factor Family AT2G19380 25.197 8.08e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed6g1916 zf-met 1.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1916 - - gsj:114392332 257.299