LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1911	ATGATGTTTGACTGCGGTCCTAAGTCAGAATACATGGGTGGCCAGCGGGAGAATTTTTTGAGGTTGGAGGCCTTGGATTCTACGTTATCTTCATCTTCTGATGCCGGAGTTATCAAATCTGGATTTAGTATTGATAAATTAAGCCATGGTCATGGAAGCAGCACAACTTCTAGATCTTTCAAAAGGGGAATGAGACGGGGATCTGAAGGACTGAAATCAATTGGGCGATCATTTGGGTTGGGAGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCAGGAAAGAAGATATTTGATCCTCAAGACAAATTTCTGCTATTATGGAATAAACTTTTTGTTATCTCATGCATTTTGGCTGTGTCTATAGATCCACTATTTTTTTATCTCCCAGTCATTAATGATTCATCTCATTGTCTTGGCATAGACCGAAAGTTGGCAACAATAGTTACGACCTTAAGGACAGTGATTGATGTTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGTGGTGAGCTTGTGATAGATTCGGCACAGATAGCCAAGCGATACTTGCGGCGGTATTTCATCATTGATTTTCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAAGCTTGCAGTGACCACGGGTGCAATAAAAATTTCCTATATTGTGGGAACCAGAACATGATAGGTTATATTGCTTGGAATAAATCAAGTGAAGCTATTCTTAAGTCAAGGTGCTCTGTAGATGGTCCTTTTGATTATGGAATTTTCAAGCAAGTATTGTCTTCAAGCATCATTTCATCTAAGAAGTTCATCACCAAATACTGTTACTGTTTATGGTGGGGGCTCCAAAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATTCTCTTTGCCCTTCTGATTGGAAACATGCAGACATATCTTCAGTCTCTCACCATTAGGCTCGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTAAGAGAGCGCGTGAGACGGTATGACCAATATAAGTGGCTGGCAACACGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCAGAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTAAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACTTACATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTGTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACTGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTGCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTCGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGATGCTGATGAGTCAGAAGGAACTCATGAAAATGCTGGTGGAAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCTGCGCACACTCTTCGCGGTGTACATCGCAATCGACTTGCCAAGACTGCCAGGGAATTAGTGAAACTACAGAAACCCCCTGAGCCTGACTTCTCAGCAGATGATGCTGACTAA	2193	0.4273	MMFDCGPKSEYMGGQRENFLRLEALDSTLSSSSDAGVIKSGFSIDKLSHGHGSSTTSRSFKRGMRRGSEGLKSIGRSFGLGVSRAVFPEDLKVSGKKIFDPQDKFLLLWNKLFVISCILAVSIDPLFFYLPVINDSSHCLGIDRKLATIVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDHGCNKNFLYCGNQNMIGYIAWNKSSEAILKSRCSVDGPFDYGIFKQVLSSSIISSKKFITKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGANLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDADESEGTHENAGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1911	730	PANTHER	NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED	14	727	-	-
	Aed6g1911	730	Pfam	Cyclic nucleotide-binding domain	523	613	IPR000595	-
	Aed6g1911	730	SUPERFAMILY	Voltage-gated potassium channels	100	424	-	-
	Aed6g1911	730	Gene3D	-	111	427	-	-
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	165	174	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	465	472	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	154	164	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	282	292	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	371	388	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	397	408	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PRINTS	EAG/ELK/ERG potassium channel family signature	415	424	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed6g1911	730	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	14	727	-	-
	Aed6g1911	730	Pfam	Ion transport protein	108	428	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Aed6g1911	730	SMART	cnmp_10	502	633	IPR000595	-
	Aed6g1911	730	Gene3D	Jelly Rolls	500	620	IPR014710	-
	Aed6g1911	730	CDD	CAP_ED	502	633	IPR000595	-
	Aed6g1911	730	SUPERFAMILY	cAMP-binding domain-like	431	622	IPR018490	-
	Aed6g1911	730	ProSiteProfiles	cAMP/cGMP binding motif profile.	502	604	IPR000595	-
	Aed6g1911	730	Gene3D	Helix hairpin bin	430	493	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1911	Aed-Chr6	22221707	22228349	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1911	12	727	Ion Channels	AT5G57940	78.255	0.0	1149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1911	K05391		-	gmx:100784327	1350.11

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g1911	6	22221707	22228349	Aed6g1911	6	22221707	22228349	ECH