LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1906	ATGGCTGAGCGCCGCAGCCCCCAACCTCTCCCAGAGCCAGACTCCCAAGAAAACAACGATTCTCACCAAAACCCGCAACACACCAAGGAGACTGAACGAGTCGCTGAACCTCCCTCCGCCGCCGAGTCGCAGCGCGGCGAGTTACGGAGTTCCGCCGAAACTCGTACAGAGTCCAATTTAGAAACCCTAGGCGGTGGTGTTCCCTCTTCGGTTGAAACCCTTGCTGTGCAGCATCGGAGTGACGATGTGCAAGGTAGCTCTACTGCGCCGAATTCGGGTGGCAAAGCCGAAAGTAAGGAGACAGTTGGACCTCCTGAAAAAGAAATTATTGAAAGCGGAGCAGCTCAGCCACTCCAAACTCAGACAGAAAATCGGCTTCAGGTGTCTGTGTGTTCAACTCCATTGTCTGAACTATCACCAACTTCTGTTACACAATCTTTATCATCTGTTTCTAGTCCAACTGTACCTAAACAGAAAATATCTACTCCAAAGGTCAACAACGCACATGTGCCAGAGGTAGTTAAGAAAAATCCTTCTAGTGGCAAAACCTTATCTGCTGTTTCTGTTGCAAGGACGTCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGACTGTTGTGCCAAGAAGATTGAATGCTGTAATGATTCAGGTCATGTGATAGAGATTGTTTATAAAAGTGAGCACAGTCATGATCCCCCGCGGAAGACTAATTCCATTAGGGAAAGTAAGATTCAGTCTTCCAGTGAACCTATTGTAGAAAACAGTGTTCCGGTGCAGCCTGTGAGAGTTCTGAAGGATCCTGATCCATCCATTTCTTCAAAAGAATCTCTACAAGAAGCACCCTGCAGCACTGATAGGAAACGACAATACTCATCTGATATCAGTGGTAATGGTAAAGTTATTTTGAAAGAGGAACATGTAAATGAGCCAGAGCTGAAAAAAAGGCAAAAAGGTGACTTAACAGACATGGATTCTACCGTAAAACCTGGAAAGAAGCCCAAGTTTGTTGTACATGCAGCAGGGGATGTGGGGATATCTGGTGATGGTTATCGATGGCGCAAGTATGGGCAGAAAATGGTGAAGGGAAATCCACATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCAGAAAGCACATTGAGACAGCTGTAGATAACTCGGATGCCGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCTCCATGAACAGTTTGCAGGTGAAGAAGCCCGATTCCCCACAAAACAAGAAAATTTCTACTCAATGGTCAGTGGACACTGAGGGAGAACTAACTGGGGAAGCCCTGGAACTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA	1518	0.471	MAERRSPQPLPEPDSQENNDSHQNPQHTKETERVAEPPSAAESQRGELRSSAETRTESNLETLGGGVPSSVETLAVQHRSDDVQGSSTAPNSGGKAESKETVGPPEKEIIESGAAQPLQTQTENRLQVSVCSTPLSELSPTSVTQSLSSVSSPTVPKQKISTPKVNNAHVPEVVKKNPSSGKTLSAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCNDSGHVIEIVYKSEHSHDPPRKTNSIRESKIQSSSEPIVENSVPVQPVRVLKDPDPSISSKESLQEAPCSTDRKRQYSSDISGNGKVILKEEHVNEPELKKRQKGDLTDMDSTVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKKPDSPQNKKISTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1906	505	Gene3D	WRKY domain	180	254	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	Gene3D	WRKY domain	351	427	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	SUPERFAMILY	WRKY DNA-binding domain	362	426	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	259	274	-	-
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	319	351	-	-
	Aed6g1906	505	PANTHER	WRKY TRANSCRIPTION FACTOR 32-RELATED	19	503	-	-
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	137	164	-	-
	Aed6g1906	505	ProSiteProfiles	WRKY domain profile.	189	253	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	19	503	IPR044810	GO:0003700
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	73	95	-	-
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	245	351	-	-
	Aed6g1906	505	SMART	WRKY_cls	366	425	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	SMART	WRKY_cls	194	252	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	291	316	-	-
	Aed6g1906	505	ProSiteProfiles	WRKY domain profile.	361	426	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	SUPERFAMILY	WRKY DNA-binding domain	191	253	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	Pfam	WRKY DNA -binding domain	368	423	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	Pfam	WRKY DNA -binding domain	196	250	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed6g1906	505	MobiDBLite	consensus disorder prediction	1	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1906	Aed-Chr6	22178113	22182493	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1906	81	505	WRKY Transcription Factor Family	AT4G30935	54.036	3.34e-138	405

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Aed6g1906		WRKY	2.3e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1906	-		-	gmx:100127377	854.358

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g1906	6	22178113	22182493	Aed6g1906	6	22178113	22182493	ECH