Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1905 ATGTCTGACGAAGAGCATCACTTCGATTCTCAAGCAGATGCGGGAGCGTCCAAGACGTACCCTCAGCAGGCTGGTACCATTCGTAAGAATGGCTACATCGTCATTAAATCCAGGCCTTGCAAGGTTGTAGAGGTTTCTACATCAAAAACAGGGAAGCATGGACATGCAAAGTGCCACTTTGTTGCAATTGATATTTTTAATGGGAAAAAGCTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTTCCACATGTGAACCGCACTGACTATCAGCTTATTGATATCTCTGAAGATGGCTTTGTGAGTCTGTTGACTGATAATGGAAATACCAAGGATGATCTGAAGCTTCCCACTGATGAGGCGTTGCTTACTCAGGTGTCTTGTTGA 390 0.4385 MSDEEHHFDSQADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLTQVSC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1905 129 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Aed6g1905 129 SUPERFAMILY Nucleic acid-binding proteins 86 127 IPR012340 -
Aed6g1905 129 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 127 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Aed6g1905 129 TIGRFAM eIF_5A: translation elongation factor IF5A 17 121 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Aed6g1905 129 Gene3D - 86 128 IPR012340 -
Aed6g1905 129 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Aed6g1905 129 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g1905 129 SMART eIF_5a_2 85 127 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Aed6g1905 129 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Aed6g1905 129 PIRSF Transl_init_eIF5A 1 129 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Aed6g1905 129 Gene3D - 1 85 IPR014722 -
Aed6g1905 129 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1905 Aed-Chr6 22170653 22173133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1905 1 127 Eukaryotic Initiation Factors Gene Family AT1G13950 89.764 7.19e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1905 K03263 K02180 gmx:100305510 259.61