Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1904 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGCACTCTTGTTCAAGCATTTGGCATCTCAGCAACCAAACACTGATGAGTTCTTTGTGTCTGAGTTCTTAAAGAAGATGGCTTTAACATCCTCCGAAGCCTACAACTTCTCTGCTTCTGTCTGTTCATGGAAAGGGGTTTCTTGTGATGCCAATGGAGAACATGTTGTTGGCTTGGCACTTTCTGGTATGAACCTTTCTGGCACTATTCCTGACAACACCATAGGCAAGCTAGGAAAGCTTCAGTCTTTGGATCTTAGTCACAACAAAATCACTGTCTTGCCCTCAGATTTCTGGAGTTTAAGCTCTCTCAAGAGCCTTGACCTCTCCTCCAATCAGATTTCTGGCCCATTGACTAACAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATATCTCAGAGGAAATTCCTGAAGATTTTAGCTCACTGCTGAGCCTGAGGATCCTCAAACTAGACCACAACAGGTTTGCACACAATATACCTTCTGGGATTCTCAAGTGCCACTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTGAATGGAACGCTTCCAGAAGGTTTTGGTGCTGCTTTTCCTGAGCTTAGGGTCTTGAACCTTTCTGGGAATAATATGTATGGTCATATTTCAGATATTTCTGGGTTAAAGTCCATTATGAAACTCAACATATCAGGGAATTCGTTTCAGGGTTCTATTGTGGATGTGTTTCAGGGAAGGTTGGAGGTTCTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTCCACAGGTACTATACAACTTTAGTAGTTACAATTGGTCTGATTTAGTTTACCTGGATTTGTCAGAGAATAAGCTTAGTGGGGATTTTTTTCAAAATTTGAATGAGTCCTTGAATTTAAAACATGTTAATCTTGCACACAATAGATTTACCAGACAGAAATTCCCAAAAATTGAAATGCTCCTGAAATTGGAATATCTGAACTTATCCAAAACTAGCCTTGTTGGTGAAATTCCAGATGAAATCTCACAAATGAGTAATTTGAGTGCACTTGATCTTTCTATGAATCATCTCAGTGGGAAAATTCCCTTACTGAGGAATGAACACCTCCAAGTCCTTGACATTTCAAACAACAATTTGACTGGAGCAGTCCCTCCATCTGTCTTGGAGAAACTCCCATGGATGGAGAAGTACAACTTCTCTTATAATAACCTAACCCTTTGTGCTTCTGGAATCAAACCTGAGATCCTGCAAATAGCATTCTTTGGATCATTGAACAGTTGTCCAATTGCTGCAAACCCACGACTCTTCAAAAGAAGAGACAATGGACACAAGGGAATGAAGCTAGCCCTGGCATTGACCTTCTCAATGATCTTTGTGCTTGCTGGCCTTTTGTTCCTAGCATTTGGTTGCAAAAGGAAAACAAAAATGTGGGAATTCAAGCAATCATCATACAAAGAAGAGCAAAACATTTCAGGTCCTTTTTCATTCCAGACCGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCAAGTAGTAATCTTTGAGAAGCCTTTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGCACCCTTTTGGCTGAAGGAAAATTCGGGCCAGTCTATAGAGGCTTTTTGCCTGGTGGCATTCATGTGGCAGTTAAGGTTTTGGTTGTAGGTTCTACATTGACAGATGAAGAGGCTGCAAGAGAGTTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGATATTGTGTAGCTGGGGACCAGAGAATTGCCATATATGATTACATGGAGAATGGTAGCTTGCAAAACCTGCTTTATGACTTGCCACTTGGAGTGCAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAGCTGATAACAATGGCATTCAAAATGCTGGCTCTGAAGGGCTACTCACATCCTGGACATTTCGCCACAAAATCGCCCTTGGCACGGCTCGAGCATTGGCCTTTTTGCATCATGGTTGCTCACCTCCAATAATCCACAGAGCTGTTAAGGCTAGCAGTGTGTATTTGGACTATGACTTGGAGCCAAGGTTGTCTGATTTCGGGTTGGCCAAGATCTTTGGAAGTGGCTTGGATGATGAAATTGCGCGCGGCTCGCCTGGTTATGTTCCACCAGAGTTTACTCAACCAGAATTGGACACTTCAACACCAAAATCTGATGTGTACTGTTTCGGGGTGGTACTGTTTGAGTTAGTGACTGGAAAGAAGCCAGTTGGAGATGATTACCCTGATGATAAAGAAGCAACTTTGGTGAGTTGGGTGAGAGGACTTGTAAGAAAGAACCAAGCTTCAAAAGCTATTGATCCGAAAATTCGTGACACGGGACCAGATGAACAAATGGAAGAGGCTCTTAAGATTGGTTATCTTTGCACTGCTGAACTTCCCTTGAAACGACCAAGCATGCAACAGATAGTTGGACTTCTAAAGGACATTGAACCTACTGCAAGTTAG 2565 0.4218 MGLGVFGSVLVLALLFKHLASQQPNTDEFFVSEFLKKMALTSSEAYNFSASVCSWKGVSCDANGEHVVGLALSGMNLSGTIPDNTIGKLGKLQSLDLSHNKITVLPSDFWSLSSLKSLDLSSNQISGPLTNNIGNFGLLESIDLSSNNISEEIPEDFSSLLSLRILKLDHNRFAHNIPSGILKCHSLVSIDLSSNQLNGTLPEGFGAAFPELRVLNLSGNNMYGHISDISGLKSIMKLNISGNSFQGSIVDVFQGRLEVLDLSRNQFQGHIPQVLYNFSSYNWSDLVYLDLSENKLSGDFFQNLNESLNLKHVNLAHNRFTRQKFPKIEMLLKLEYLNLSKTSLVGEIPDEISQMSNLSALDLSMNHLSGKIPLLRNEHLQVLDISNNNLTGAVPPSVLEKLPWMEKYNFSYNNLTLCASGIKPEILQIAFFGSLNSCPIAANPRLFKRRDNGHKGMKLALALTFSMIFVLAGLLFLAFGCKRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVQVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGSLQNLLYDLPLGVQSTDDWSTDTWEEADNNGIQNAGSEGLLTSWTFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFTQPELDTSTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKEATLVSWVRGLVRKNQASKAIDPKIRDTGPDEQMEEALKIGYLCTAELPLKRPSMQQIVGLLKDIEPTAS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1904 854 Gene3D Ribonuclease Inhibitor 279 444 IPR032675 -
Aed6g1904 854 SMART LRR_typ_2 378 401 IPR003591 -
Aed6g1904 854 SMART LRR_typ_2 160 184 IPR003591 -
Aed6g1904 854 SMART LRR_typ_2 112 135 IPR003591 -
Aed6g1904 854 SMART LRR_typ_2 136 159 IPR003591 -
Aed6g1904 854 SMART LRR_typ_2 331 355 IPR003591 -
Aed6g1904 854 SMART LRR_typ_2 89 111 IPR003591 -
Aed6g1904 854 Pfam Protein tyrosine and serine/threonine kinase 552 844 IPR001245 GO:0004672|GO:0006468
Aed6g1904 854 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
Aed6g1904 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Aed6g1904 854 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515
Aed6g1904 854 Pfam Leucine rich repeat 79 125 IPR001611 GO:0005515
Aed6g1904 854 PRINTS Leucine-rich repeat signature 92 105 - -
Aed6g1904 854 PRINTS Leucine-rich repeat signature 112 125 - -
Aed6g1904 854 Pfam Leucine Rich repeat 377 392 IPR001611 GO:0005515
Aed6g1904 854 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 851 - -
Aed6g1904 854 SUPERFAMILY Protein kinase-like (PK-like) 526 846 IPR011009 -
Aed6g1904 854 ProSiteProfiles Leucine-rich repeat profile. 211 233 IPR001611 GO:0005515
Aed6g1904 854 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Aed6g1904 854 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Aed6g1904 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Aed6g1904 854 SUPERFAMILY L domain-like 46 420 - -
Aed6g1904 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1904 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1904 Aed-Chr6 22165603 22168167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1904 60 849 Receptor kinase-like Gene Family AT5G07280 32.349 2.88e-112 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Aed6g1904 PK_Tyr_Ser-Thr 1.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1904 - - gmx:100787157 1565.44