Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1900 ATGGCTATGCTCCGCAAATTGTTTTTCCGTAAGCCTCCTGATGGCCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGATTCCTGCTTCACCACGGATGCTTGGAATGAAGGGAATTACAGAGTGTACGCGGATGGAATAGTTGGTCAACTTAAGGAGAACGTGCCTGATGCTTCAATTATGATTTTCAATTTTCGCGAGGAAAATATGAAGAGTCAGATGGCAAATATCATGTCTGAGTATGACATTACTATCATGGACTATCCTCGGCACTACGAGGGTGTTCCCGTGCTCAAAATGGAGCTTATTCACCACTTTTTGAGGTCTGGTGAAAGTTGGCTCTCGCTTAGCCAGCATAATGTGTTGCTGATGCATTGTGAACGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGTCTGCACTATTGATTTATAGAAAGGTTTATACTGGGGAGCAGAGGACTCTAGATATGGTTTACAGGCAGGCTCCGCAAGAGCTTTTGCATTTGTTGTCGCCATTGAATCCGACCCCTTCCCAACTGAGGTATCTTCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCCCTGGACAGGGCACTCATGTTGGACTGCGTCATTCTCAGACGCTTCCCAAACTTCGATGAGGAAGGTGGTTGTCATCCCATTTTTAGAATTTATGGACAGGATCCCTTTAATGCTGATAAAAATCCAAAAATGTTGTACTCAACGCCAAAGAGAAGCAAAAATGTCCGGGCCTATAAGCAGGGAGAGTGTGAACTTATTAAAATCGATATCAATTGCCATATTCAAGGTGATGTTGTCATTGAGAGCGTTAACTTGAATGATAATATGGATCGTGAAAAGATGATGTTCAGAGTCATGTTCAACACAGCTTTTGTTAGATCTAATATTTTGATGCTTAACCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTTAGAGCCGAGATCCTTTTCTCAGAGATAGACGCTGCTGCAGCAGTTATTGCGGATGGTACCTCATGCTTTGAAGAGAAGGAAGGACTGCCAATTGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCTGATGCTGCACTAAATGTGCTCCAACAGATGAGTGCTTCAGCTGTGAATGACAGGTTGGATACAGCTTCTGACCAGTATGTGGAAAATGGGACTTCCTTGCATGAAACAAGTCCTACAATGCCTCAGGGGAATTTGAATGAAGCAGGACAGTCTTTATCCTCAACTAAGAGATCCTCATATAATGACATGAGTAGAAAAGAGGATAAGACCAACAGGGTCGAGGGTATTCCACAACAACCTAGTACACCTAACATCATCCATCATGAGACAGCCAGATCTTCAGAAAGAACCTTGGAATCCAATAAATGTCCAACAGGTCCGACAAATCTTGACATAAAACTGCAGGCACTTCGTCCTGCCTTATCTGGTTCTGTTGATACTTCTTTTTCCCCTAGAACACCTCCTTTGCGGCCTCAATCCACTAGTGCTAAAGAAGTTCATGATTCTCCTCGCCGAACAGAATCGCCCCCTTCTTGTGTTTTGCCTCTGCAATCAAAACACCAATCACAAGACAAAAGTTCTATGCCTACACCTGGGACCCAATTGTCATCTACTTTCCATAGTAAGTCACCAGCTGACACCATTTCCAATCCTTCAGCTTCAGCAATTACTTCAACTCAGCCATCTCCTTCACTTTCTTCCAAAAATGTTAATGAGATTCATCCTATTAGAACAAGACTAGATTCTTCCCCTTCACGACCTCCAACTTCACCACCTCCTCCTACCCCTCCACTAAAGGATCATAGACTTGTTCGAGCTAGACCTCCTCCACCTCCACCACCTCTATCTCCTATGAATGCGAAACCACAGGCTAGAGATGGGCCCTCTCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCTCCAAAAGAGGAGCAACCTGTTATGTTTAATGCTCCTCCACCCCCACCACCTCCTTGCCTCTCGGGGAAAGTTGCAGGTTCTACCATAGCACTACCAGCAGCCCCTGCTCCACCTCCTCTTGCAGCACCTGCTGCTCCACCTCCTCCTGGTAAAGGAGGTCTAAAACCAGGCGGTGCATTTCCATTATCTCTTTCTGCGAATGGTGATGGAAATAATGTGTCGGGACAAAAGGGACGAATTCCATCACGTACGATCACCTCAAAGAGTAACACAAAGAAGTTGAAGCCATTGCATTGGTTGAAACTATCGAGAGCAGTGCAAGGTAGTTTGTGGGCTGAGACACAGAAATCTGGCGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAGTCTCTTCTCAGCAGCAGTCCCAAGTTCAGGTGCTGCCAAAAAGTCAAATGTCCAAGGCTCAGCTGGCCCTAAATCTGATAAAGTGCAACTGATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTGAAAGTGCCGTTGGATGATTTAATGAGCTCAGTGCTAGCACTGGAGGAGTCAACACTCGACACTGACCAGATTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTCAAGGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGCGAACAGTTTTTAATGGAATTGATGAAAGTACCACGGGTGGAATCCAAGCTCAGAGTTTTTTCGTTCAAGATTCAGTTCAACTCTCAGGTTTCTGACATTAGAAATAGCCTTAGTGTTGTGAATGCTGCTGCAGAAGAGATCAGGAATTCTGTCAAATTTAAGAGAATTATGCAAACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAAGGGTTCTGCTATTGGATTCAGATTAGATAGCCTACTTAAACTCACAGAGACACGTGCACTAGACAAGAAGATGACTCTCATGAATTATCTTTCTAAGGTGCTAGATGACCAACTACCGGAAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGGTTCTGGACTTCTCAAAAGGCTCTTCAGTTCATTATGCTGATAGGCACTGTACTAACACTGACTTGAATAATTTGATCCAGATCCAATTGAAGTTTTTGGCTGAGGAAATGCAGGCTATAAACAAAGGATTAGAAAAAGTGGTACAGGAACTATCAACCTCTGAAAATGACGGGTCTATATCAGAAACTTTCCGCGAGAAATTGAAACAATTCCTCGGTTCTGCTGAAGCTGATGTCCGTTCATTGGCTTCACTATATTCCAGTGTGGGTAGGGGCGTGGATAATTTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTTGTGTCAACTTTGCTCAACTTTACTAGGATGTTCAACAAAGCCCATGAAGAAAACCGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCAGAAAATTTTTTACCTACAGCTATCCGGACTGGCAATGTCAAATAG 3582 0.4391 MAMLRKLFFRKPPDGLLEICERVYVFDSCFTTDAWNEGNYRVYADGIVGQLKENVPDASIMIFNFREENMKSQMANIMSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLSQHNVLLMHCERGGWPVLAFMLSALLIYRKVYTGEQRTLDMVYRQAPQELLHLLSPLNPTPSQLRYLLYVSRRNVALDWPPLDRALMLDCVILRRFPNFDEEGGCHPIFRIYGQDPFNADKNPKMLYSTPKRSKNVRAYKQGECELIKIDINCHIQGDVVIESVNLNDNMDREKMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPKDFRAEILFSEIDAAAAVIADGTSCFEEKEGLPIEAFAKVQEIFSHVDWMNPKADAALNVLQQMSASAVNDRLDTASDQYVENGTSLHETSPTMPQGNLNEAGQSLSSTKRSSYNDMSRKEDKTNRVEGIPQQPSTPNIIHHETARSSERTLESNKCPTGPTNLDIKLQALRPALSGSVDTSFSPRTPPLRPQSTSAKEVHDSPRRTESPPSCVLPLQSKHQSQDKSSMPTPGTQLSSTFHSKSPADTISNPSASAITSTQPSPSLSSKNVNEIHPIRTRLDSSPSRPPTSPPPPTPPLKDHRLVRARPPPPPPPLSPMNAKPQARDGPSPPPPPPPPPPPPPKEEQPVMFNAPPPPPPPCLSGKVAGSTIALPAAPAPPPLAAPAAPPPPGKGGLKPGGAFPLSLSANGDGNNVSGQKGRIPSRTITSKSNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMSELESLFSAAVPSSGAAKKSNVQGSAGPKSDKVQLIEHRRAYNCEIMLSQVKVPLDDLMSSVLALEESTLDTDQIENLIKFCPTKEEMELLKGYNGEKEKLGRCEQFLMELMKVPRVESKLRVFSFKIQFNSQVSDIRNSLSVVNAAAEEIRNSVKFKRIMQTILSLGNALNQGTAKGSAIGFRLDSLLKLTETRALDKKMTLMNYLSKVLDDQLPEVLDFSKDLANLEPAAKVLDFSKGSSVHYADRHCTNTDLNNLIQIQLKFLAEEMQAINKGLEKVVQELSTSENDGSISETFREKLKQFLGSAEADVRSLASLYSSVGRGVDNLILYFGEDPSRCPFEQVVSTLLNFTRMFNKAHEENRKQLELEMKKTAESEKKKCESENFLPTAIRTGNVK 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1900 1193 MobiDBLite consensus disorder prediction 501 750 - -
Aed6g1900 1193 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 410 438 - -
Aed6g1900 1193 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 410 489 - -
Aed6g1900 1193 PANTHER FORMIN-J 1 1176 - -
Aed6g1900 1193 Gene3D - 199 339 - -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 453 467 - -
Aed6g1900 1193 SMART PTEN_C2_2 197 336 IPR014020 -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 732 750 - -
Aed6g1900 1193 Coils Coil 1152 1172 - -
Aed6g1900 1193 Pfam Formin Homology 2 Domain 756 1029 IPR015425 -
Aed6g1900 1193 Pfam Formin Homology 2 Domain 1050 1151 IPR015425 -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 611 625 - -
Aed6g1900 1193 SMART it6_source 751 1193 IPR015425 -
Aed6g1900 1193 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Aed6g1900 1193 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Aed6g1900 1193 Coils Coil 1058 1078 - -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 501 522 - -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 537 610 - -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 699 721 - -
Aed6g1900 1193 Gene3D Formin, FH2 domain 750 1162 IPR042201 -
Aed6g1900 1193 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 187 IPR029021 -
Aed6g1900 1193 SUPERFAMILY Formin homology 2 domain (FH2 domain) 680 1168 - -
Aed6g1900 1193 MobiDBLite consensus disorder prediction 633 688 - -
Aed6g1900 1193 ProSiteProfiles Formin homology-2 (FH2) domain profile. 751 1177 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1900 Aed-Chr6 22128573 22139477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1900 1 402 Protein tyrosine phosphatase (PTP) family AT5G58160 64.604 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1900 - - gmx:100786096 1954.1