Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1897 ATGAGTGATAAAGAGAAAGAGAAAGGCAGCGAGGGACAGTCGGCGATGCTGCAGGGGAAGTACGAGCTAGGTCGTGTGCTGGGGCATGGAACGTTTGCGAAGGTGTACCACGCGCGGAACCTGAAGACGGGGCAGCACGTGGCCATGAAGGTGGTGGGAAAAGAGAAGGTGATCAAAGTCGGAATGATGGAGCAGATCAAGAGAGAGATCTCGGTGGTCAAGATGGTGAACCACCCAAACATAGTCCAACTCCAGGAAGTAATGGCCACCAAGTCCAAGATCTACATCGCCATGGAACTCGTCCGCGGCGGAGAGCTCTTCAACAAAGTCTCCAAGGGCCGCTTAAAGGAAGACCTCGCCAGACTCTACTTCCAGCAGCTAATCTCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTACCACCGTGACCTCAAGCCGGAGAACCTCCTCCTGGACGAACACGGCAACCTCAAAGTCTCCGACTTCGGACTCACCGCCTTCTCGGAACACCTCAAGGAGGATGGATTATTACACACCACGTGCGGCACGCCTGCCTACGTTGCGCCCGAAGTCATAGCCAAGAAAGGCTACGACGGTGCCAAGGCTGATATATGGTCATGCGGAGTAATCCTCTACGTCCTCCTCGCGGGGTTCTTACCCTTTCAGGACGATAATTTGGTCGCCATGTATAAGAAAATCTACAAAGGCGACTTCAAGTGTCCACCGTGGTTCTCTCTGGACGCGAGGAAGCTTGTCACCAAACTTCTCGACCCGAACCCGAATACGCGGATTAGTATCTCCAAAGTGATGGAGTCTTCTTGGTTTAAGAAACCGGTGCCGAGGAAGGTGGAGGAGGTAAAGGTGCTGGACTTAATGGAGGAGAAGATTAACGAGGGGCAGGAGATCATGAACGCGTTTCACATAATTTCTCTGTCGGAGGGGTTCAATTTGTCGCCGCTGTTTGAGGAGAAGAGGAAGGAGGAGATGAGGTTCGCCACCGCGGGGACGCCAAGCAGCGTCATTTCGCGGCTCGAGGAGGTGGCCAAGGCCGGGAAGTTCGACGTCAAGAGTAGCGAGACAAAGGTGAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGGAAGCTTGCCATTGCGGCGGATATCTACGCCGTCACGCCGTCGTTTATGGTGGTGGAGGTTAAGAAGGACAATGGGGATACCTTGGAGTACAACCAGTTCTGCAGCAAACAGCTTCGTCCTGCGCTTAAAGATATCTTCTGGGATTCGCCACAGAATTCCACACCTGCTAGTGCTTGA 1296 0.544 MSDKEKEKGSEGQSAMLQGKYELGRVLGHGTFAKVYHARNLKTGQHVAMKVVGKEKVIKVGMMEQIKREISVVKMVNHPNIVQLQEVMATKSKIYIAMELVRGGELFNKVSKGRLKEDLARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLTAFSEHLKEDGLLHTTCGTPAYVAPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYKGDFKCPPWFSLDARKLVTKLLDPNPNTRISISKVMESSWFKKPVPRKVEEVKVLDLMEEKINEGQEIMNAFHIISLSEGFNLSPLFEEKRKEEMRFATAGTPSSVISRLEEVAKAGKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWDSPQNSTPASA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1897 431 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1897 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Aed6g1897 431 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1897 431 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 6 16 422 - -
Aed6g1897 431 Gene3D Phosphorylase Kinase; domain 1 13 100 - -
Aed6g1897 431 Pfam NAF domain 301 356 IPR004041 GO:0007165
Aed6g1897 431 CDD CIPK_C 304 416 - -
Aed6g1897 431 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Aed6g1897 431 CDD STKc_SnRK3 20 274 - -
Aed6g1897 431 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Aed6g1897 431 Gene3D Kinase associated domain 1, KA1 297 421 - -
Aed6g1897 431 PANTHER - 16 422 - -
Aed6g1897 431 Gene3D Transferase(Phosphotransferase) domain 1 101 279 - -
Aed6g1897 431 SUPERFAMILY Protein kinase-like (PK-like) 18 291 IPR011009 -
Aed6g1897 431 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1897 Aed-Chr6 22104734 22106029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1897 4 429 CBL-interacting serine-threonine protein kinases AT4G30960 72.109 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed6g1897 Pkinase 1.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1897 - K07198 gmx:100781111 778.089