Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1895 ATGCAACCTGGTAGCAGCAGAGAAATGCAAGGCCCTAACGCTAACTCTCTCTTCAACAATAACAATAGTAGTAGTAGTAGTAATCAGGCGCAGATCCAGTTCGACACCACTTCCAACGATGATTTCCTCAAGCAAATGCTCTCCAACCTCCCTTACGACCAAACCACACTTCCTTACGACGTCGTTGAACACGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCGACAACGACAAGGCCTCCGCTCTCATGCTCCACCATCACCTCCTCCTCTCCGCTGCCAACGCCAATTCCTCCCTCCTCCATATGCCCTTGTCCTCGCTAAACGACGTCGTTGTTGACGCCCCCTCCAACGGTGAGGCGGCTGCCGTTCAAGCTCTCTACAACGGCTTCTCCGGATCTCTCCCACCCTCTAACCATTTTCAACAACACCCTCAGCCTCGCCCTCAGGATCCGAGTTTTGGTGCTTCGGCTCCGGCTAGTGGTCAACCGAAGCAGAGGGTTAGAGCCAGGAGAGGACAAGCCACGGACCCACACAGCATCGCGGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAAGAACTCGTTCCTAATGCCAACAAGACTGACAAGGCCTCTATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAACTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCCTCTGAGGGAGGCGAAGGCAAACGCAACGACAGCAGCAGCTTGGGGATGACGGAGCAACAAGTGGCGAAGCTGATGGAGGAAGACATGGGTTCCGCCATGCAGTACCTTCAGGGCAAAGGTCTATGCCTCATGCCAATATCTCTGGCCACCGCAATCTCCAATGCCACGTGTCGCAGTAGGAGCCCCTTGATCCACGCTGATGGTCCTTCCTCTCCCGCAATTTCCGCGCTCACTGTGCCTAACGCCAACGATCACGCCGTTACATAG 1020 0.5431 MQPGSSREMQGPNANSLFNNNNSSSSSNQAQIQFDTTSNDDFLKQMLSNLPYDQTTLPYDVVEHANLASKFRNHQITDNDKASALMLHHHLLLSAANANSSLLHMPLSSLNDVVVDAPSNGEAAAVQALYNGFSGSLPPSNHFQQHPQPRPQDPSFGASAPASGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGEGKRNDSSSLGMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISNATCRSRSPLIHADGPSSPAISALTVPNANDHAVT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1895 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 236 IPR036638 GO:0046983
Aed6g1895 339 MobiDBLite consensus disorder prediction 1 31 - -
Aed6g1895 339 MobiDBLite consensus disorder prediction 136 184 - -
Aed6g1895 339 PANTHER TRANSCRIPTION FACTOR BHLH69 30 316 - -
Aed6g1895 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Aed6g1895 339 MobiDBLite consensus disorder prediction 136 162 - -
Aed6g1895 339 Gene3D - 171 233 IPR036638 GO:0046983
Aed6g1895 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 316 - -
Aed6g1895 339 SMART finulus 182 231 IPR011598 GO:0046983
Aed6g1895 339 Pfam Helix-loop-helix DNA-binding domain 181 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1895 Aed-Chr6 22080316 22084014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1895 36 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 53.398 1.09e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g1895 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1895 - - gmx:100801457 421.009