Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1887 ATGGTGGTTGGAGACCGTTTTCCGGTGGGCATGCGTGTACTTGTCGTTGATGACGACGAAACATGTCTCACAGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATAATGTTACTACGACTAATCAGGCAATTAAGGCGCTAGAAATGTTGAGGAAAAACAGAAACAAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGACATGGATGGGTTTAAGCTTCTTGAGCTAGTGGGACTTGAAATGGACTTACCTTTTATCATGCTGTCAGGATACGGTGATCGAGAGCGAGTGATGAGAGGGGTTATACATGGCGCTTGTGACTATTTAATGAAACCAGTTCGAATTGAAGAGTTGCAGAACATATGGCAGCATGTAGTGAGAAGGAAGATTGATAGCAAGGATAAGAATAAGACTGCAAGCGAGGGAAAAGCATGCAGTGTTGCTTGTAAGTTTGCATATGAGGAGAAAACCTGCAATATGGCTGGGGAGTGTAGTCAAGCCATGATGGCATCAAAAAATAATGCTGACCAGACTAAAACATTGGGTCAAAAAAGGAAGGAACAAAGTGAGGATGAGGTAGAGGAAGAGGAAGAATATGATCACGAGAATGAGGAACCCTCAAGTCAGAAGAAGCCGCGTTTAGTTTGGGATGCCGAGTTGCATAGCAAATTTCTTTCTGCCATTAATCAACTGGGAATTGACAAGGCTTTCCCCAAGAGAATACTTGATTTGATGAATGTTGAAGGACTTACAAGAGAAAACGTAGCAAGCCATCTGCAGAAATACAGACTCGGTCTCAAGAAACCTACTCAACAGCATGGCATGGTTGCTACGTTGGGCAGTGGTGATCCTTACCTGCAGATGGATTCAATAGATGGCTTTCGCACTTTGTCAGGATCAGGAAGAATGTTAAGCGCCACACTACCATCATATGCATCTGGTGGACTGTTTTGTAGGCTAAACCCCCCATCTAGCTTCAGAGGAATTAACTCTGCACTTGTTTGGCCTGTTCAGACTCAAAGCATTAATAGCAGGTCCATAAAAGCACTTGGAAACATGCAACTGTCCATGTTTTCTGCAAATCAAACCTCAAGTTTATTTCCAACATCATCAATCGATGCCGACCAATTTCAACAGAACAACTATTCAACTGGTATTAGGAAGTTGAGTCCACTTGATAATTCAAGTGGATTTAAAGCTACCGTTAGAAATCCAAATAATTCTCTACATGGTCTCTCAAATAATCATTTACTTTTACCAACACATAATTCAGGAGCATTCAGAAATCACTCTACTTCTCCTGGAGCTGCTGCTTCGTTGAACACGCAATCTTTTGACCCTGGCATCATCTGTGAGTTGGATTATAATCGGCCTAATAAAAGGTGGCAGGGAACAACTCCGATATCTAAGTTCACTGCCAATACTTCTGCAGTCAGCAGCAAGGTTTTCAATAATGATCAGCTGGCTCAAAATAACTTAAACTTTTCCTCATCCACTTTTTGTTGCAGTGGGAACAATCCAGTTGATTTTTCTTCCACTAGCGCTATTGCTCCTCCCTTGGAGGATGACGATAGAGGTAAGCTGCAATGTCAAGAAGGCTTACTCGAGAATATCTTACTGGCTTCATGTTACACCCAACATCAAAGCTGGGAAGATGGTGCAGATAATAAGCAGGGTTGCAACAAAGACATCATGAGTCAAACCTTCAACTCCATAAAGCCTGTCTCTCCTAATGGAGATACTAGTTCCTTAGGACATAGTTTAGACCAAAATAATAATACAGATAGCAGCAAGAGAATTGATGCATCTTTGGTTAATCCATCATCAATCACACAGTCCAATGAAGGTGAGAAATTCTATTCGACGAAGTCAATTGATGGCTGCATTTTGCAAAGCATGGAGTCCCAAGAAGGACTAATGCACAATACTTTTGGATCCCTGGATGACATAATGACTGAAATTACCAAACAGGAGCAAAATGCGATTATGCTGATGGATGGAGAAATGGAGTTTGATGCTTACCATGTTGGATCATGCATTTAA 2046 0.4164 MVVGDRFPVGMRVLVVDDDETCLTVLENLLRKCQYNVTTTNQAIKALEMLRKNRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPFIMLSGYGDRERVMRGVIHGACDYLMKPVRIEELQNIWQHVVRRKIDSKDKNKTASEGKACSVACKFAYEEKTCNMAGECSQAMMASKNNADQTKTLGQKRKEQSEDEVEEEEEYDHENEEPSSQKKPRLVWDAELHSKFLSAINQLGIDKAFPKRILDLMNVEGLTRENVASHLQKYRLGLKKPTQQHGMVATLGSGDPYLQMDSIDGFRTLSGSGRMLSATLPSYASGGLFCRLNPPSSFRGINSALVWPVQTQSINSRSIKALGNMQLSMFSANQTSSLFPTSSIDADQFQQNNYSTGIRKLSPLDNSSGFKATVRNPNNSLHGLSNNHLLLPTHNSGAFRNHSTSPGAAASLNTQSFDPGIICELDYNRPNKRWQGTTPISKFTANTSAVSSKVFNNDQLAQNNLNFSSSTFCCSGNNPVDFSSTSAIAPPLEDDDRGKLQCQEGLLENILLASCYTQHQSWEDGADNKQGCNKDIMSQTFNSIKPVSPNGDTSSLGHSLDQNNNTDSSKRIDASLVNPSSITQSNEGEKFYSTKSIDGCILQSMESQEGLMHNTFGSLDDIMTEITKQEQNAIMLMDGEMEFDAYHVGSCI 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1887 681 MobiDBLite consensus disorder prediction 572 601 - -
Aed6g1887 681 Coils Coil 186 206 - -
Aed6g1887 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 662 - -
Aed6g1887 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 662 IPR045279 GO:0009736
Aed6g1887 681 Gene3D - 10 145 - -
Aed6g1887 681 CDD REC_typeB_ARR-like 13 127 - -
Aed6g1887 681 PIRSF RR_ARR_type-B 2 681 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aed6g1887 681 Gene3D - 208 269 - -
Aed6g1887 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Aed6g1887 681 SUPERFAMILY CheY-like 10 134 IPR011006 -
Aed6g1887 681 MobiDBLite consensus disorder prediction 176 213 - -
Aed6g1887 681 Pfam Myb-like DNA-binding domain 216 264 IPR001005 -
Aed6g1887 681 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Aed6g1887 681 SMART REC_2 11 123 IPR001789 GO:0000160
Aed6g1887 681 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Aed6g1887 681 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Aed6g1887 681 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1887 Aed-Chr6 22037828 22040872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1887 5 332 Response Regulator Gene Family AT2G25180 52.239 3.58e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed6g1887 Response_reg 9.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1887 K14491 - gmx:100803040 1028.85