Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1880 ATGGCTTCGAATCTCAATGTTTTCTTCACCGTTCTTACCTTCTTCCTCCTTCTGAATTCTCACTCTTATGCAGATACCACCCCTTTGTGGGTGAAAGCTGGTTATTACTATTCAGGCAGTGAAATTTCTGCTTCAGACATAGAAGCCAAGCTCTTCACTCACCTTTTATGTGCTTTTGCTTTCATAAACTCCACCAGCTACAGCATCTTCATCAACTCTTCTGAGGAGCACAAGTTCTCTGCCTTCACCAACACTGTGAAGCTTCGAAACCCATCTGTTTCAACGCTTCTATCAATCTGGGGTGGCAGAGAGGACTCTTCTGTGTTCACCTCAGTGCTAAACCAATCTTTTCATAGAAAAATTTTCATTGATTCTTCAATCAGAACAGCTAGGCTCCATGGCTTTAATGGCATAGACCTCACTGGGGCGTGGCCACAAGAGGGTTCAGAGGTTACCAATTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCTGAGGCAAGAAACTCTAACAAGCCAGAGTTGTTGTTGGTCATGTCTGGTTACTACCTTAAAGCTTCAGACACTTTGAGTTACCCTTTTGATTCAATGCAGGAGATTTTGGATTGGGTACATTTTGTGGCATATGATTACTATCTTCCTAAAAAGGACAATGTCACAGGTTTTCATGCAGCCTTGTATGGTTCATCTGGTTGGGATAACACTGACTCTGGCATTAAAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATACGCGTGGACACTTGTGAACCCTGGAGGAAACAGTGGCGTGGGAGCACCAGCATCAGGATTTGCTGTTACAATGGATGGTTCCATGGCTTACAAGTTCATAAATAGTTACATTAGAAGCTTTGGAAATGTTGTTTCACATTACAATGCCTCTTTTGTGGTGAAACAGTTCACTGTTGCGTCCACCACTTGGGTCAATTTTGATGATGCAGAGGCAATCAGGGCCAAAGTTTCTTATGCAAGGGAAAACGGACTACTTGGTTACAACGTGTTCCAATTAGGCAATGATGAAAATTGGGAACTTTCAAGGGCAGAGGAGGTTGGTGATAATTGTTCTGCTTACAACTCTCACTTTGGTTCTTCTGTTGGGAATAGTATTTTGCTACTACCACCGAGTGGGTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACAAAGTATGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAAGAGGACTTCATGTTATTATGGCACGCATGAAAATATGACCCTTTTGGAATATGCATATGAGCTGTGGAGAGAAGGTAGAGGTGTGGAGTTTGTTGACCCTTCATTGGATGATAGAACATCATGTTGTAAAATCATGAGATGCATGCATGTGGCTCTGTTGTGCGTTCAAGAGAACTCTGCTGATAGACCTTCCATGTTGGAAGTAGATTCACTGCTGAAGAATGAAGGTGCAGCCATTGGTACTCCCAAAAGGCCTGCTTTTTCAGTTACAAAAGGTGAAGATGAGGAAGAAACATATCACAGTGGGATCAAATTTTGTTCAATCAATGATGTTACAATTTCTCAACTGGAACCAAGATGA 1641 0.4223 MASNLNVFFTVLTFFLLLNSHSYADTTPLWVKAGYYYSGSEISASDIEAKLFTHLLCAFAFINSTSYSIFINSSEEHKFSAFTNTVKLRNPSVSTLLSIWGGREDSSVFTSVLNQSFHRKIFIDSSIRTARLHGFNGIDLTGAWPQEGSEVTNFGTLLKEWRAAITSEARNSNKPELLLVMSGYYLKASDTLSYPFDSMQEILDWVHFVAYDYYLPKKDNVTGFHAALYGSSGWDNTDSGIKEWRRRGFSSKKLLIGLPYHGYAWTLVNPGGNSGVGAPASGFAVTMDGSMAYKFINSYIRSFGNVVSHYNASFVVKQFTVASTTWVNFDDAEAIRAKVSYARENGLLGYNVFQLGNDENWELSRAEEVGDNCSAYNSHFGSSVGNSILLLPPSGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMTLLEYAYELWREGRGVEFVDPSLDDRTSCCKIMRCMHVALLCVQENSADRPSMLEVDSLLKNEGAAIGTPKRPAFSVTKGEDEEETYHSGIKFCSINDVTISQLEPR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1880 546 Gene3D - 260 329 IPR029070 -
Aed6g1880 546 Pfam Protein tyrosine and serine/threonine kinase 393 496 IPR001245 GO:0004672|GO:0006468
Aed6g1880 546 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 395 542 - -
Aed6g1880 546 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 369 - -
Aed6g1880 546 Gene3D Glycosidases 45 359 - -
Aed6g1880 546 Gene3D Transferase(Phosphotransferase) domain 1 361 506 - -
Aed6g1880 546 SUPERFAMILY (Trans)glycosidases 33 359 IPR017853 -
Aed6g1880 546 Pfam Glycosyl hydrolases family 18 35 358 IPR001223 GO:0005975
Aed6g1880 546 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 374 IPR001223 GO:0005975
Aed6g1880 546 SMART 2g34 30 358 IPR011583 GO:0008061
Aed6g1880 546 SUPERFAMILY Protein kinase-like (PK-like) 393 503 IPR011009 -
Aed6g1880 546 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 395 542 - -
Aed6g1880 546 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 21 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1880 Aed-Chr6 21980209 21985011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1880 12 366 Glycoside Hydrolase AT4G19810 44.382 7.44e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed6g1880 Glyco_hydro_18 2.1e-54 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1880 - - aprc:113847882 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1880 6 21980209 21985011 Aed6g1880 6 21980209 21985011 ECH