Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1879 ATGGCTTCGAATCTCATTGCTTTCTTTACTGTCCTTCTTACCTTCTTCCTCTTCCTTCTGAAATCTCATTTCTCCTCTGCAGATGCCACCCCTTCGTGGGTGAAAGCTGGTTATTACTATTCAGGCAGTAAAATTTCTGCTTCAGACATAGAAGCCAAGCTTTTCACCCACCTTTTATGCGCTTCTGCCTACATAAATTCCACCAGCTACAGCATCTTCATCAACTCTTCTAAGGAGTACGAGTTCTCAGCCTTCACCAATACTGTGAAGCTCCGAAACCCATCTGTTTCAACGCTTCTATCCATCCGGGTTGGCAGAAACAGAGAAGACTCTCCAGTCTTCATCTCAATGCTAAACCAATCTTCTCATAGAAAATTTTTCATTGACTCTTCAATCAGAACAGCGAGGCTCTATGGATTTCATGGCATAGACCTCACTGGGGCGTGGGCACACGAGGGTTCAGAGGTTACCAAGTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCTGAGGCAAAAAACTCTAGCAAGCCAGAGTTGTTGTTGGTCATGCAAGGTTACTACCTCAAGGCTTCAGACAATTTGAGTTACCCTTTTGATTCAATGCAGATGAATTTGGATTGGGTTCATTTTAAGGCATATGATTACCATCTTCCTAAGAGGGACAATGTCACAGGTTTTCATGCGGCTTTGTATGGTTCATCTGGTTGGGATAACATTGATTCTGGCATTAAAGAGTGGAGGAGGAGGGGGTTTTCATATAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGACACTTGCTGTGAACCCTGGAGCAAACAGTGGCGTGCCCCGCGTGGGAGCACCAGCATCAGGACCTGCCTTTACAATAGATGGTTCCATGGGTTATAAGTTCATAAAGAGTTACATCAGAAGCTCTGGAAATGTTGTTTCACTTTCTCATTACAATGCTTCTTTTGTGGTGAAGCAGCTCACTGTTGCGTCTACTGTTTGGGTTAATTTTGATGATGCAGAGGTAATCAGGGCCAAAGTTTCGTATGCAAGGAAAAATGGACTACTTGGTTACAACGTGTACCAAGTAGGCAATGACGAAAATTGGGAACTTTCAAGGGCAGCTCAAGAAGGAGATGAAGAAATTGAAGATAATCATAAGAAGAGGTTGGTGATAATTGTTCTGCTTACAACTCTGACTTTGCTTCTTCTGTTGGGAATAGTATTTTGCTACTACCACCGGGGAACAGGAGCCACTGCTACAAAAATATTTGGGTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACAAAGTATGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAAGAAGACTTCATGTTATTATGGCACGCATGAAAATATGACCCTTTTGGAATATGCCTATGAGCTGTGGAGAGAAGGCAGAGGTGCGGAGTTTGTTAACCCTTCATTGGATGATAGAACATCATCTTGTAAAATAATGAGATGCATGCATGTGTCTCTGTTGTGCGTTCAAGATAACTCTGCTGATAGACCTTCCATGTTGGTAGTAGATTCCCTGCTGAAGAATGAAGATGCAGCTATTGATACTCCCAAAAGGCCTGCGTTTTCAGTTACAAAACGTCAAGATGAGGAAGAAACATCTCACAGTGGGATCAAAATTTGTTCAATCAATGATGTTACAATCTCTCAATTGGAACCAAGATGA 1740 0.4224 MASNLIAFFTVLLTFFLFLLKSHFSSADATPSWVKAGYYYSGSKISASDIEAKLFTHLLCASAYINSTSYSIFINSSKEYEFSAFTNTVKLRNPSVSTLLSIRVGRNREDSPVFISMLNQSSHRKFFIDSSIRTARLYGFHGIDLTGAWAHEGSEVTKFGTLLKEWRAAITSEAKNSSKPELLLVMQGYYLKASDNLSYPFDSMQMNLDWVHFKAYDYHLPKRDNVTGFHAALYGSSGWDNIDSGIKEWRRRGFSYKKLLIGLPYHGYAWTLAVNPGANSGVPRVGAPASGPAFTIDGSMGYKFIKSYIRSSGNVVSLSHYNASFVVKQLTVASTVWVNFDDAEVIRAKVSYARKNGLLGYNVYQVGNDENWELSRAAQEGDEEIEDNHKKRLVIIVLLTTLTLLLLLGIVFCYYHRGTGATATKIFGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKKTSCYYGTHENMTLLEYAYELWREGRGAEFVNPSLDDRTSSCKIMRCMHVSLLCVQDNSADRPSMLVVDSLLKNEDAAIDTPKRPAFSVTKRQDEEETSHSGIKICSINDVTISQLEPR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1879 579 Gene3D - 265 340 IPR029070 -
Aed6g1879 579 Gene3D Transferase(Phosphotransferase) domain 1 409 548 - -
Aed6g1879 579 Pfam Glycosyl hydrolases family 18 38 369 IPR001223 GO:0005975
Aed6g1879 579 Pfam Domain of unknown function (DUF3403) 534 579 IPR021820 GO:0004674
Aed6g1879 579 Gene3D Glycosidases 48 370 - -
Aed6g1879 579 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 33 385 IPR001223 GO:0005975
Aed6g1879 579 SMART 2g34 33 369 IPR011583 GO:0008061
Aed6g1879 579 SUPERFAMILY (Trans)glycosidases 33 381 IPR017853 -
Aed6g1879 579 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 419 - -
Aed6g1879 579 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 427 575 - -
Aed6g1879 579 SUPERFAMILY Protein kinase-like (PK-like) 427 553 IPR011009 -
Aed6g1879 579 Pfam Protein tyrosine and serine/threonine kinase 428 478 IPR001245 GO:0004672|GO:0006468
Aed6g1879 579 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 26 419 - -
Aed6g1879 579 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 427 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1879 Aed-Chr6 21973965 21979660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1879 1 380 Glycoside Hydrolase AT4G19810 41.299 6.46e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed6g1879 Glyco_hydro_18 3.5e-45 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1879 - - aprc:113847882 537.339