Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1877 ATGGCCTCTGACATCTCGTTTGAGGACCTCAAAAACGAGAATGTGGATCTTGGCAAGCCACCGGATTGGCAAGATTTCCTTGGTATTGTGGTGTTGCTCATCATCAATTCAACCATTAGTTTTATTGAAGAGAACAATGCAGGCAATGCCGCAGCAGCTTTAATGGCTGGTCTTGCACCCAAAACCAAGATTGAAGCTGTTGTCATTGCCACCGGTGTTCACACCTTCTTTGGCAAGGCTGCACATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAGAAGGTGGCGACTATGATTGCTGTGTATGCTCATTGGGACTTTGCCAGGATCAATGGAGTTGGTTGGGGATGGGCAGGAGCAATCTGGGTCTTCAGCGTTGTTACCTATATTCCTCTTGACATCCTCAAGTTCCTCACCCGGTTGGGGCTATCAGGCAGGGCATGGGACAACATTGTTGAGAACAAGACTGCTTTCACAACAAAGAAGGATTATGGAAAGGGAGAAAGAGAAGCTCAATGGGCAGTGGCTCAGCGCACACTTCATGGTCTCCAAGTCGGAGAAAGCAGCAACAAAGCCAATCAACATGATCAGTCTGATATTGCCGAGCATGCTAAGAGGCGTGCTGAGGCTGCCAGGTTGAAGGAGCTCCACACACTGAAGGGACATGTTGAGTCTGTGGTCAAGTTGAAGGGTATTGACATTGATACCATCCAGCAACACTACACACTCTAA 735 0.4816 MASDISFEDLKNENVDLGKPPDWQDFLGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVATMIAVYAHWDFARINGVGWGWAGAIWVFSVVTYIPLDILKFLTRLGLSGRAWDNIVENKTAFTTKKDYGKGEREAQWAVAQRTLHGLQVGESSNKANQHDQSDIAEHAKRRAEAARLKELHTLKGHVESVVKLKGIDIDTIQQHYTL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1877 244 PANTHER CALCIUM-TRANSPORTING ATPASE 63 98 - -
Aed6g1877 244 Gene3D - 89 142 - -
Aed6g1877 244 Gene3D - 9 64 - -
Aed6g1877 244 PANTHER PLASMA MEMBRANE ATPASE 96 225 - -
Aed6g1877 244 PANTHER PLASMA MEMBRANE ATPASE 63 98 - -
Aed6g1877 244 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 102 IPR023298 -
Aed6g1877 244 Gene3D - 194 244 - -
Aed6g1877 244 PANTHER CALCIUM-TRANSPORTING ATPASE 96 225 - -
Aed6g1877 244 PANTHER CALCIUM-TRANSPORTING ATPASE 18 64 - -
Aed6g1877 244 PANTHER PLASMA MEMBRANE ATPASE 18 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1877 Aed-Chr6 21960039 21965014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1877 18 64 Primary Pumps ATPases AT3G42640 89.362 1.01e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1877 K01535 - gmx:100798717 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1877 6 21960039 21965014 Aed6g1877 6 21960039 21965014 ECH