Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1876 ATGGCGCCTCAGACACTCACCGATTACGAACGCAAACGTCTCGAGAACATTCGCCGTAACGATGAAATGATGGCTGCCCTCAAACTCCATTCCAAAGTCACCCAACTCTCCAACTTCAAGCGAAGTCAAACTCAAAGGGTCGGAACAAAATCCTACAACTTGAAATCGGAAAAGAAACCGAAAACCGAAACCCCAATTGTTATTAGGCGCTCCCTGCGAACAAGGGGTATTCCACCAGATTCCAAAGGTCTTGACGGAGATTCCGTGGGTCCCACCACTCCCACCGAAGCCGAACCCTCCGTTGTAAGTTTGGGTCCTATTTCCATGGCTGATGCTCGTGAAAGCGATCACTCTGATAGTTCCTTCGTTGAATCACTCATGGGTATGACTCAAAAGGTGGCCCAAGATGCTAGTGTTGAAAAAGGGAAACTGGAGGGTTCCCTTGGGTTGGAATCCCTGTATTTGGATCCTGAGAATATTGCACGGGTTGTTCCTGGAAGGATAACCAGTGTGGGGTTTTTTCCTTCCAGTTGTGTCAAAATGGTCGCGGTGGGTAACAAATTTGGGAATGTTGGGTTCTGGAATGTGGGAGAAAGCGAGGTTCATTTATACCGTCCCCATCAAGCTCCCATTTCTGGGATCTTGATTCAACAACATTGCTTGTCCAAGATATACACAAGTTGCTATGATGGAATTCTTCGGCTAATGGACGCTGAGAAGGAAATATTTGATCTGGTATTTGAGAGTGATGAAAATATATATGCTCTCTCTCAACCAACAAATGAGACAAACAGCCTATATCTTGCTGAGGGTTCTGGAGGTTTGACTATTTGGGATAACAGGATTGGAAAACGTTCATCACACTGGGCATTGCATGAAAAGAGAATCAACACAATAGATTTCAACTGTGAAAACCCTCATATTGTAGCTACCAGTTCCTCTGATGGAACTGCCTGCACCTGGGATTTGAGATATGCTGATGGGGATAAGCTCACAGCCTTGAGGACATTTACCCACAAAAGATCTGTGCAATCTGCTTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAAGCTTGGACGACACAATTGGTATTTACAGCGGAGTTAACTTGGAGGATGCAGCTGTTATTTATCATAACAATCAGACTGGGAGATGGCTTTCTACTTTCAGCAGAGCAAAATGGGGCTGGGATGAATCATATCTCTTTGTTGGAAATATGAAAAGAGGAGTGGATGTCCTCTCGGCAGTTCAAAGGAAAATAGTTATGACTCTAGAGAGCCCCCACATCTCTGCAATTCCTTGCAGACTTAGTACACACTCTTGCGAGGTTGGTATGCTAGCAGGAGCTACAAGTGGAGGCCAGGTTTATATTTGGAGGTCGCGCTAG 1392 0.454 MAPQTLTDYERKRLENIRRNDEMMAALKLHSKVTQLSNFKRSQTQRVGTKSYNLKSEKKPKTETPIVIRRSLRTRGIPPDSKGLDGDSVGPTTPTEAEPSVVSLGPISMADARESDHSDSSFVESLMGMTQKVAQDASVEKGKLEGSLGLESLYLDPENIARVVPGRITSVGFFPSSCVKMVAVGNKFGNVGFWNVGESEVHLYRPHQAPISGILIQQHCLSKIYTSCYDGILRLMDAEKEIFDLVFESDENIYALSQPTNETNSLYLAEGSGGLTIWDNRIGKRSSHWALHEKRINTIDFNCENPHIVATSSSDGTACTWDLRYADGDKLTALRTFTHKRSVQSAYFSPSGCSLATTSLDDTIGIYSGVNLEDAAVIYHNNQTGRWLSTFSRAKWGWDESYLFVGNMKRGVDVLSAVQRKIVMTLESPHISAIPCRLSTHSCEVGMLAGATSGGQVYIWRSR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1876 463 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Aed6g1876 463 PANTHER UNCHARACTERIZED 1 461 - -
Aed6g1876 463 SUPERFAMILY WD40 repeat-like 164 461 IPR036322 GO:0005515
Aed6g1876 463 SMART WD40_4 330 368 IPR001680 GO:0005515
Aed6g1876 463 SMART WD40_4 282 322 IPR001680 GO:0005515
Aed6g1876 463 SMART WD40_4 419 461 IPR001680 GO:0005515
Aed6g1876 463 SMART WD40_4 197 237 IPR001680 GO:0005515
Aed6g1876 463 MobiDBLite consensus disorder prediction 40 61 - -
Aed6g1876 463 Gene3D - 159 463 IPR015943 GO:0005515
Aed6g1876 463 PANTHER WD REPEAT-CONTAINING PROTEIN 76 1 461 IPR033052 GO:0006974
Aed6g1876 463 MobiDBLite consensus disorder prediction 73 101 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1876 167 415 U-box Gene Family AT1G04510 24.335 5.39e-08 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1876 6 21948963 21951463 Aed6g1876 6 21948963 21951463 ECH