Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1868 ATGGCTTTCCACGAGCATCTGCAGCACGAAATAGCGTTCCAGCGGTTCACGGAGGAGCAAGAGTTGAGCGAGAATAGAGACATGCAGCAGAGGCAGCTTCCACCTCCTCCGACATGGCTCAACAACGTCAACGTTAACGCGCGTCAACAGAATTTCCTGGACGAGAAAAGCGTAGATCGGAGCCACCGCAGCGACAGCAATTGCGGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGACACCCTCTCTACGATCAACTGCTATCGGCGCACGTTTCGTGCCTCAGGATTGCCACCCCCGTCGACCAGCTTCCCAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAATACTCCGCGCTTGCACACAACGGCGTCGTCGACGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGAGAAGGAACGGGTGCAACAATGTCAGATGATGAAGATGAGCTGCAGGCAGAGAGCAATGGTAACTTATACGAAGGAAGCTTTGATGGCGGTGGTGAAAGTCTTGGGTTTGGTCCTCTTGTCCCCACTGAAACTGAAAGATCTTTGATGGAGCGAGTGAGGCATGAGTTGAAGCATGAACTCAAACAGGGTTATAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTTCCTGGGGACACCACTTCCCTTTTGAAATCTTGGTGGCAAACACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAGAGGAAAAGGAACTGGCATACTAATAACCCTTCATCCTCTAGTAACACCAAAACCAAGCGCAAGAGTGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1053 0.4976 MAFHEHLQHEIAFQRFTEEQELSENRDMQQRQLPPPPTWLNNVNVNARQQNFLDEKSVDRSHRSDSNCGESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDELQAESNGNLYEGSFDGGGESLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKSWWQTHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNTKTKRKSAGETSNQSFM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1868 350 CDD homeodomain 265 326 IPR001356 GO:0003677
Aed6g1868 350 SUPERFAMILY Homeodomain-like 264 328 IPR009057 -
Aed6g1868 350 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 25 344 - -
Aed6g1868 350 Pfam KNOX2 domain 133 182 IPR005541 GO:0003677|GO:0005634
Aed6g1868 350 SMART HOX_1 264 329 IPR001356 GO:0003677
Aed6g1868 350 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Aed6g1868 350 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677
Aed6g1868 350 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677|GO:0006355
Aed6g1868 350 MobiDBLite consensus disorder prediction 319 350 - -
Aed6g1868 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 344 - -
Aed6g1868 350 MobiDBLite consensus disorder prediction 182 202 - -
Aed6g1868 350 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Aed6g1868 350 SMART ELK_2 242 263 IPR005539 GO:0003677
Aed6g1868 350 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677
Aed6g1868 350 SMART KNOX2_2 128 183 IPR005541 GO:0003677|GO:0005634
Aed6g1868 350 Pfam ELK domain 242 263 IPR005539 GO:0003677
Aed6g1868 350 Gene3D - 268 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1868 Aed-Chr6 21870188 21877388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1868 77 347 Homeobox Transcription Factor Family AT5G11060 81.818 3.11e-160 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed6g1868 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1868 - - gmx:100803673 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1868 6 21870188 21877388 Aed6g1868 6 21870188 21877388 ECH
Aed6g1868 6 21870188 21877388 Aed4g1138 4 10824456 10833219 PCT