Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1862 ATGGGTTCATCATCTAGTCGACTTGGCTCTCGCCCTTCTACTTCCAGTTCTAGTCACAGGGTCAACCACCGCTTCAGACTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCAGCTGAACTTCAGGTTCATTCAGCAAGAGATTTTGATGGTGAAATTCAGAAAGACACTGAGGAATCGCCTTTATCATACACAGAAGCTAGAATTAGCTCCAGTTCCCCTGCTGAAACTGCAACCTCAGCTGATATCAGAACTGAGTTCCATGGGAATACCGGTGTTGAAGGTTCTTTTAGAAACGTGGCAACAAATAGTCAGAGGAACTGCTTGGCTGAACACGAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTGGTCGTCAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTGAATAATCCAGTGGTTAGTGGTGTCTCTCAAATCTCTCATGAGACAATGCGTCCAAGAAGTTCAACCCCTCAAGAGCATGGGAATTTTGGTTCTGGTGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCAGCCCTGTTGCCCAAGTTTCCAACTTAGCAGCTACTTCTCAAGTGCCAGAAGATGAACCTCGTCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGAGAAAGAGGACCGGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGAAGCAGTGTTGATGTCAATGATCAAGATTCCAGAAGGAATGGTGGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTTTCTGCTGGGGGTGCTGATGATTCTGGATCTCAAGATCGATGGCTAGTTGATTTTGGTGATGATTTGTCAAATGATGGGGTTGGAGGTGCTTCCGGATATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCTCCAATGGCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCAATGTCTCTATCCATGGTCTCACTCCCTGCACCTGAATCAGTTGTTGATTCCTTCCCTCTGAGATCTCACAAAAAGGTTGATGTGGCTGATGGAGGCAATGATGCTGAACAATGCTACATATGTCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCTGCCACGAGTATCACATGTCATGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAATCTCCTGTCCACTCAGAAGTGCAGTCTCATTGA 1626 0.4477 MGSSSSRLGSRPSTSSSSHRVNHRFRLSSLLCGTSTSRSIHQMEEHSAELQVHSARDFDGEIQKDTEESPLSYTEARISSSSPAETATSADIRTEFHGNTGVEGSFRNVATNSQRNCLAEHEELVPPYQVSAGHSGRQSYSDSSNTASTSFVEQQSSDPVSVNVSANKDVVNDVNNPVVSGVSQISHETMRPRSSTPQEHGNFGSGEISVENHTSAFISIQNSSSPVAQVSNLAATSQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSSVDVNDQDSRRNGGRLFWDAFSRRSSRRLGDSPTIVFSAGGADDSGSQDRWLVDFGDDLSNDGVGGASGYMGSRIHRLNERRMRHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSMSLSMVSLPAPESVVDSFPLRSHKKVDVADGGNDAEQCYICLAEYEEGDQIRVLPCCHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESPVHSEVQSH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1862 541 SUPERFAMILY RING/U-box 463 525 - -
Aed6g1862 541 MobiDBLite consensus disorder prediction 132 161 - -
Aed6g1862 541 Coils Coil 538 541 - -
Aed6g1862 541 Pfam Ring finger domain 479 522 IPR001841 -
Aed6g1862 541 MobiDBLite consensus disorder prediction 184 208 - -
Aed6g1862 541 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Aed6g1862 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Aed6g1862 541 MobiDBLite consensus disorder prediction 65 90 - -
Aed6g1862 541 MobiDBLite consensus disorder prediction 130 161 - -
Aed6g1862 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 526 IPR013083 -
Aed6g1862 541 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g1862 541 MobiDBLite consensus disorder prediction 72 90 - -
Aed6g1862 541 SMART ring_2 480 521 IPR001841 -
Aed6g1862 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1862 Aed-Chr6 21833294 21837528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1862 350 526 C3H Transcription Factor Family AT5G45290 45.876 1.48e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1862 - - gmx:100783604 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1862 6 21833294 21837528 Aed6g1862 6 21833294 21837528 ECH