Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1859 ATGTGTGTGCAAGACGGTGAACAAGTTGGTGAGGATACAGAGAAGAACGTTGATAACAATAACAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCACATGGATAACAGGGATAAAGACTCTTCTTTTATAACTCCCTCTGACCAGATCACTGTTGCAAATTCATCCTCTCTGGAAAGCATATGTGAGGATGCAGTAATTGTGGACAAAAAACAGAACATGATGAACTTTGACCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGATCGCACTTCCATGGAGGATACCCACATATGCATTGGAGACTTGGCAGAAAAATTTGGTAACAACGAACTTTGCAAGGAAGCTATTTCCTTTTATGGTCTGAGTTATGTTGAATGGATATTTGATGAAAACTATTTCTATGTCTTGTATAGGTCTTTACTAGTTGCCAATGCTGGAGACTGCCGCGCTGTATTGTCCCGCAGTGGAGTGGCTATAGAAATGTCCAAAGATCATAGGCCATTTTGCATGAAAGAAAGAATGAGGATTGAGTCCTTAGGTGGATACGTGGATGACGGTTACCTGAACGGCCAGTTAGGTGTGACTCGCGCTCTAGGCGACTGGCATCTTGAAGGAATGAAGGGAAAGGGTGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCCGCAGCCAAAATGCCGTGGACTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAAGCTGTGTTGCAAGGAGGTAATAGGTGAAGCAATAAAGAGAGGAGCAACAGATAACTTGACAGTGGTCATGATATGTTTTCACTCAGAACCACCACCTTCTGTGGTTGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAATATTAAGTCTTTGCTAGAAGGATAG 987 0.4326 MCVQDGEQVGEDTEKNVDNNNNRRVSWPLHCDLLHAHMDNRDKDSSFITPSDQITVANSSSLESICEDAVIVDKKQNMMNFDPTLRSGEWSDIGDRTSMEDTHICIGDLAEKFGNNELCKEAISFYGLSYVEWIFDENYFYVLYRSLLVANAGDCRAVLSRSGVAIEMSKDHRPFCMKERMRIESLGGYVDDGYLNGQLGVTRALGDWHLEGMKGKGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKLCCKEVIGEAIKRGATDNLTVVMICFHSEPPPSVVVERPRVRRSISAEGLQNIKSLLEG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1859 328 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 143 316 - -
Aed6g1859 328 Gene3D - 136 308 IPR036457 -
Aed6g1859 328 SUPERFAMILY PP2C-like 76 297 IPR036457 -
Aed6g1859 328 SMART PP2C_4 76 293 IPR001932 -
Aed6g1859 328 PANTHER PROTEIN PHOSPHATASE 2C 1 128 IPR015655 GO:0004722|GO:0006470
Aed6g1859 328 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g1859 328 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 128 - -
Aed6g1859 328 ProSiteProfiles PPM-type phosphatase domain profile. 86 295 IPR001932 -
Aed6g1859 328 CDD PP2Cc 86 295 IPR001932 -
Aed6g1859 328 Pfam Protein phosphatase 2C 141 287 IPR001932 -
Aed6g1859 328 PANTHER PROTEIN PHOSPHATASE 2C 143 316 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1859 Aed-Chr6 21820423 21823833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1859 42 328 PP2C-type Phosphatase Gene Family AT2G25620 45.115 1.37e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Aed6g1859 PP2C 2.3e-47 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1859 K14803 - csv:101210349 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1859 6 21820423 21823833 Aed6g1859 6 21820423 21823833 ECH
Aed6g1859 6 21820423 21823833 Aed4g1129 4 10714075 10719922 PCT