Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1858 ATGGGAAGTAATGGTACTGAAAAGTTCCCAATCAATAGCATCGCTGAAAGTTCAGAAACCACCATTGAGATAAAAATTAAAACATTGGATTCTCAAACATACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCTGAACGACAACGCTTAATTTGTCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTATCTGCCTATCCAATTGTACTTTATTCTTGCAACTATATCCCTATTTTCGATATCCTATCTTCAAAATGGGTTTCCTCCCTAACACAAGTAGATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGTCCAATCATTCAGTGACTGAACTGAATTCAAGCACAAGCCTTGGTCACACAAGTCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAGGGTGATGGAGTTCCTCCTGAAATCAATAGGATTGTTTCTGCTGTTCTAGGATCCATTGGACTTCCAAATTTTGCGAGTGGCGGTGAAGGAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCTCTGGAAGAACTTTTGGTTCTAGTGGACTATTAGATTCATCTCATCCTCAACCCGAACAAGCTGGTTTTCGGATTTTGTCTGATAGATCACGCAATACCTTTGGAACCCCAGCACCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATACTTAAGACATATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGAGGGATATTGGCCAAGCAGCTGAGGCTCAAAGGAATGAAGAAACTAGATCTGTTTCTTCACGTTCAGGCTCAACTCCAGAAGGACTTTCATCACCCGCATCCTTGGCAGAAGTTTTACTTTCTTCCAGACAAATGATTGATCAACAAGCCGGTGAATGCCTACTTCAACTATCTGGGCAGCTGGAGAATCAAGCAAGTGTAACGGATCCCATGTTGCGGTCAAGCATTCAGTCTAGAGCTTTGAGAACTGGAGTTTTGTTCTATAACCTTGGTGCCTTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAGCAAGCTTTGGCACTGTCCCTATGGGAGCTGCACAGTCAAACTCAAGTTTAGGCAGTGGACTTGGTTCAAGCTTTTTCCCAAGGCGTATAGATATACAGATACGTCGAGGTACCTCAACAACCTCATCCAATGCCAATCAAGAAGAACGCAATGATACACAATCTGCCTCTGTACAAAGAAATCCAGGTGAAAGTTCTGTTAATCAGGCAAATTCTAGGCGTCCAGATGCATCCATTGCTGGGGAGCCAGGAGTAAGGTTAGTGCCAATTAGAACCATGGTTGCAGCAGCAGTACCAGGCACCTTAGGGCGTCCGCCTTCAGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTGCAACATGTATCTTCTGGACATGCAAATAGTGAACAGGGATCCCAACAATCAAGTCAGCATCATGTTGCGGTACCGTCAACTCCTGAATCCATGTTGCAAAGGCAAAACACAGAAGATTCTGCAAGGAATGTAGGATCCTTGTCAACTCCAAGCACAAGACAAGAGCCATCAAATTCTCGTGTTGTAAATATCAATATTCTGACTGCTAGTGGACCCCAAAACAACCAAGAATCTGAGAGACAGGTACCAAGCAGTGTACTACAGTTTTTAAGGACACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAACAACTGCGGGTTCTACCTCAGATCATGCTGCAACATCAATGGGTGCTGCCCAGCTTCCTGAAGCACAACCTAATATCAGTGAAGAAGGAGTATTTTTGTCTAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGATCTGAGGGAAATTCTTCAGAAGATGATCATATGGCTCAAGATTCTTCAACGCAGGTCTGCATGCTTAATTGCTTTCTTTCGTTTTTCTATTGTGTGATTACATTTGTTCTTCCCGAGGTTGCTGAACAGGTAGAAACTGATGTCGGGACATCACGCAGACAGAGTGATTCTGATCCAAGCCCCCCAAATCCAAAACGTCAAAAGCGAGAGTTCCATTCTCCTTGTTCCCACACTCCAATGGGCAGAGGGGGTGAATACTTACAAAGGCATCCTGACCCTCGTACCGAGAAGGCTTTTTTGAAGCAACCAAAAGTGTTTCTCAGCTCGAAGAAAACTGGGAAGGGAAAGAGACCTGGAAAGGGTGGAAACCGCTTTTGGAAATCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACTTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCCTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGGAGGAATTATCTCCATTTTATCAAGAAGTACCAGAGGTACGAGAAAAGGCACTCAAATATCCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGAGATCACGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCAGCTGGATCCTCTAGCGGTGCAAAGAAGGCCTTTTCCGGAATCTGA 2856 0.4426 MGSNGTEKFPINSIAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYPIVLYSCNYIPIFDILSSKWVSSLTQVDVEDGHTLHLVVRQPDLPPPGSVSNHSVTELNSSTSLGHTSQVAPGVFIETFNVPVQGDGVPPEINRIVSAVLGSIGLPNFASGGEGGIDVREHDSQGSGRTFGSSGLLDSSHPQPEQAGFRILSDRSRNTFGTPAPVSLGSLQPPVIPDSLTTLSQYLRHISHEFDAIVREGRDIGQAAEAQRNEETRSVSSRSGSTPEGLSSPASLAEVLLSSRQMIDQQAGECLLQLSGQLENQASVTDPMLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGASFGTVPMGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSTTSSNANQEERNDTQSASVQRNPGESSVNQANSRRPDASIAGEPGVRLVPIRTMVAAAVPGTLGRPPSESSGNSIGLYYPILGRLQHVSSGHANSEQGSQQSSQHHVAVPSTPESMLQRQNTEDSARNVGSLSTPSTRQEPSNSRVVNINILTASGPQNNQESERQVPSSVLQFLRTLFPGGEIHVEDSSVQGTTAGSTSDHAATSMGAAQLPEAQPNISEEGVFLSNMLREIMPVISQQVGSEGNSSEDDHMAQDSSTQVCMLNCFLSFFYCVITFVLPEVAEQVETDVGTSRRQSDSDPSPPNPKRQKREFHSPCSHTPMGRGGEYLQRHPDPRTEKAFLKQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFSGI 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1858 951 MobiDBLite consensus disorder prediction 194 223 - -
Aed6g1858 951 TIGRFAM uS17_arch: ribosomal protein uS17 847 935 IPR028333 -
Aed6g1858 951 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 772 - -
Aed6g1858 951 Gene3D - 15 142 - -
Aed6g1858 951 MobiDBLite consensus disorder prediction 550 604 - -
Aed6g1858 951 MobiDBLite consensus disorder prediction 205 220 - -
Aed6g1858 951 ProSitePatterns Ribosomal protein S17 signature. 913 925 IPR019979 GO:0003735|GO:0005840|GO:0006412
Aed6g1858 951 PRINTS Ribosomal protein S17 family signature 913 923 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed6g1858 951 PRINTS Ribosomal protein S17 family signature 923 930 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed6g1858 951 PRINTS Ribosomal protein S17 family signature 880 903 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed6g1858 951 MobiDBLite consensus disorder prediction 650 676 - -
Aed6g1858 951 MobiDBLite consensus disorder prediction 650 666 - -
Aed6g1858 951 SUPERFAMILY Nucleic acid-binding proteins 860 939 IPR012340 -
Aed6g1858 951 Gene3D - 789 950 - -
Aed6g1858 951 MobiDBLite consensus disorder prediction 749 763 - -
Aed6g1858 951 MobiDBLite consensus disorder prediction 457 505 - -
Aed6g1858 951 MobiDBLite consensus disorder prediction 285 312 - -
Aed6g1858 951 Pfam Ribosomal protein S17 866 934 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed6g1858 951 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 772 - -
Aed6g1858 951 SMART ubq_7 22 120 IPR000626 GO:0005515
Aed6g1858 951 MobiDBLite consensus disorder prediction 457 496 - -
Aed6g1858 951 Pfam Ubiquitin family 24 82 IPR000626 GO:0005515
Aed6g1858 951 ProSiteProfiles Ubiquitin domain profile. 22 82 IPR000626 GO:0005515
Aed6g1858 951 SUPERFAMILY Ubiquitin-like 13 82 IPR029071 -
Aed6g1858 951 MobiDBLite consensus disorder prediction 290 312 - -
Aed6g1858 951 Pfam Ribosomal_S17 N-terminal 796 864 IPR032440 -
Aed6g1858 951 MobiDBLite consensus disorder prediction 749 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1858 Aed-Chr6 21802866 21816665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1858 796 951 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.462 8.59e-87 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1858 K23390 - gmx:100783070 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1858 6 21802866 21816665 Aed6g1858 6 21802866 21816665 ECH