Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1844 ATGGGAAAGAAAAAGAAGCAAATAGGAGAAATAAGGGAGGATGGTAAAGTGGGAGATAGCAGCCCCAGAGCATATGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAATCTATTCCAAAAGAGGGATCTTGAAGGAGCTTTACTAAAATATGAGAAAGCCCTCAACTTGCTTCCGAAAAATCATGTTGACGTGTCCTATCTGCGGAGCAACAAGGCTGCATGTTACATGCAGATGGGACTCAGTGAGTTCCCAAGGGCAATTCATGAATGTGATTTGGCTCTTCAAGTGACACCAAAATATAGCAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGGGATGCCAGCACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTTAGAGAAGGTGAAAAATGCACTTGGGGAGAAAGGATTGAGAGTAAGTGATGCAATAATTGAGTTGCCTACAGATTATGTTGAACCTCCTAATGGTTTGCCTCCAGAAAAGGTATCAAAAGAGAAGAGGCGGAAGAAGAAGGGCAATAAAGAGGAAGAGAAGGCTCCTGATGACAAAATTCTAGAAAAGAAAACCAAGGAAAAATTTGAGGAGAAGAAGGCTGAGGGCAGTATTGTAGTCATAGAGAAGAAGATCAACACTTCCAAGAAGAAGGCCAAGGAAAAAAATGATGAGAAGAAGGCTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGCATGGAACATGTTCTTAAGAAGACAGCTAAACTTATTTTTGGCGATGATATAAGATGTGCTGAAGTGCCTATTAATTGTAGCCTCTTCCAATTAAGAGAAGTTATTCAGGACCGATTCCCAAGCCTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGATCTAGTAATGGTTCTATCCGACTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGTAGAAGTGGCTGGCATTAACATTGCACCTGAGAATGGTTGTGTGGGAAAGGCAAATGAAATTATTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGAAAGATGTTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACGGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATTGCTGGAGATAAGTTCCAAGAGATGACTGCTCTTGCGTTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTATATTTCACAGAAGATTCTTCTAAAGAATATCTATGTGAACAAATCAAAAGTTCATATGAATGGGCACTGGAAGAATATGCAAAAGCCGGAGAAAAATATGAAGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCACTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTCAGTAGTAATGTAGATTTACTGACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCTGATATGGGAAGAATCAGAAAAGCAGAACTTGAGTAAAACATCTAATTCAAATGATGTTACATTGCATTTGCATAACATGGGGCTGGATGGGCTTTTTACAAATATATCCTTAGATGAACTTGCAGCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTTCCATGTTATATGAACGCTCATTTGTGGAGTTCAAATTAGAGCTACCAATATGGCATGAATCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACGGATATATCTGTAATTTTGAAGAATCACTGTTCAAATTATGCTGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGAGTGGAGTTCCATCGTTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAGAACTTATCATGCCTTTGAGCTTGCATGA 2172 0.3983 MGKKKKQIGEIREDGKVGDSSPRAYDNDTMVFISMSQELKNEGNNLFQKRDLEGALLKYEKALNLLPKNHVDVSYLRSNKAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKRARCYEALNRLDLALRDASTVVKMEPNNVMALEILEKVKNALGEKGLRVSDAIIELPTDYVEPPNGLPPEKVSKEKRRKKKGNKEEEKAPDDKILEKKTKEKFEEKKAEGSIVVIEKKINTSKKKAKEKNDEKKADIKEVIEERSNGSMEHVLKKTAKLIFGDDIRCAEVPINCSLFQLREVIQDRFPSLGAVLVKYRDQEGDLVTITSDDELRWAETGSSNGSIRLYIVEATPEQDPLFEKFKVKEVEVAGINIAPENGCVGKANEIISSSCIEDWIIQFAKLFKNHVGFESERCLDFHELGMKLYSEALEETVTSEEAQGLFDIAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKEYLCEQIKSSYEWALEEYAKAGEKYEAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSSNVDLLTWPSTEVLHLYNNAEENMEKGMLIWEESEKQNLSKTSNSNDVTLHLHNMGLDGLFTNISLDELAAQEAHMRSQINLLWGSMLYERSFVEFKLELPIWHESLEVAVEKFELAGASPTDISVILKNHCSNYAVDGLAFKIDEIVQAWNEMYKAKKWQSGVPSFRLEPLFRRRVSRTYHAFELA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1844 723 Coils Coil 238 258 - -
Aed6g1844 723 Gene3D Tetratricopeptide repeat domain 32 167 IPR011990 GO:0005515
Aed6g1844 723 SUPERFAMILY TPR-like 36 159 IPR011990 GO:0005515
Aed6g1844 723 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Aed6g1844 723 Pfam PB1 domain 271 345 IPR000270 GO:0005515
Aed6g1844 723 ProSiteProfiles PB1 domain profile. 269 347 IPR000270 GO:0005515
Aed6g1844 723 CDD PB1 273 344 - -
Aed6g1844 723 SMART tpr_5 110 143 IPR019734 GO:0005515
Aed6g1844 723 SMART tpr_5 74 109 IPR019734 GO:0005515
Aed6g1844 723 SMART tpr_5 36 69 IPR019734 GO:0005515
Aed6g1844 723 PANTHER PROTEIN PHOX3 4 722 - -
Aed6g1844 723 Gene3D - 271 347 - -
Aed6g1844 723 MobiDBLite consensus disorder prediction 184 208 - -
Aed6g1844 723 SMART PB1_new 269 347 IPR000270 GO:0005515
Aed6g1844 723 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g1844 723 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Aed6g1844 723 PANTHER PROTEIN CLMP1 4 722 IPR044517 -
Aed6g1844 723 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g1844 723 MobiDBLite consensus disorder prediction 174 208 - -
Aed6g1844 723 SUPERFAMILY CAD & PB1 domains 263 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1844 Aed-Chr6 21724652 21728592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1844 19 143 Calmodulin-binding Proteins AT3G25230 27.737 2.54e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1844 - - gmx:100778972 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1844 6 21724652 21728592 Aed6g1844 6 21724652 21728592 ECH
Aed6g1844 6 21724652 21728592 Aed4g1110 4 10435292 10439638 PCT