Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1821 ATGTCCACGAATCACTCTCACAATACCAATGGAGACTCCGAAACTCTCCTTCGTCGACCTTTGTTGTACTCCCAAAGATCCACTATTAACTCCACGTCCCAGGTTGCTATTGTTGGCTCCAATGTCTGCCCAATTGAGAGCCTCGACTACGAGTTTCTGTTGGCCTTTTTAATATTTTTTGTTTCAAATTTGGGTCTCACGCTTTTTGCGTGCACACTCACGGCTTTGATAGCTCCTACTGCCTCCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAGTATTTACTGTACGAACTCTGCTTGTTAAGATTATTGGAAGCATTACAGCAGTGTCATCGTCGCTTCTTATCGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCAGCATTATTAGGCCAGGGTGGGTTGAAGAGATATGGGATAACATGGAAATGGTTACAGTATTTTAAGAATGACCGAGATAGGAGAGATCTTATAATATGTGGATCAGCAGCTGGAATGGCTGCTGCCTTCCGTGCCCCTGTTGGTGGCGTGTTGTTTGCTCTTGAAGGGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCTTGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGAGGACTGATAATGTTCGATGCTTATTCAGCTAGTATTTCATATCATTTGGTGGATGTTCCTTCTGTTTTTGTTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATTTAATTTGATTTTGAGCAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTGTTATCTCCATTTTTACATCATGTCTTCTTTTTGGATTGCCATGGTTGACATCTTGCCGACCTTGTCCACCTGATCCAACTGAGCCTTGTCCTACGATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGACGACGCTATTAGAAATCTATTTAGCAAGAATACCAATGATGAGTTTGAGTTTAAATCAGTGTTGATATTTTTCATCACATGCTTTTCTTTAAGTATCTTCAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTCATTGTGACTGGTGCATCTTATGGGCGCATTGTTGGAATGTTGCTTGGCAACAAGTCCAGTCTCAACCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGCTCCATGAGGACAACAGTTTCTCTGTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATATCTAAGACTGTAGCAGATGTTTTCAATGAAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGGCGATGTAGTCACAGGCCCACTTCAGACGTTTAATGGCATTGAGAAGGTTCGCAACATAATGTTTATTCTCAGAACTACAGGACATAACGGGTTTCCTGTTATAGATGAGCCTCCTATCTCGGAAGCTCCGGTTTTATTTGGCATAATCCTTCGTCACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTATGGCAACAAGTGATGATGTCTTCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATGGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTAAGGCATCTGCTAGTGATACCCAAGATCTCCTGTAGATCACCAGTGGTGGGTATACTCACACGACACGATTTCATGCCAGAACATATATTGGATTTGCATCCCTTTCTGGTAAGAAACTCGGGGGGGAAAAGTTTAAGATTTTAG 2106 0.4207 MSTNHSHNTNGDSETLLRRPLLYSQRSTINSTSQVAIVGSNVCPIESLDYEFLLAFLIFFVSNLGLTLFACTLTALIAPTASGSGIPEVKAYLNGVDAPGVFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGLKRYGITWKWLQYFKNDRDRRDLIICGSAAGMAAAFRAPVGGVLFALEGMASWWRSALLWRAFFTAAIVAILLRALIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDVPSVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWLTSCRPCPPDPTEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTNDEFEFKSVLIFFITCFSLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGNKSSLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADVFNENIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIMFILRTTGHNGFPVIDEPPISEAPVLFGIILRHHLLTLLKKKAFMSSPMATSDDVFNEFSADDFAKKGSSKGRLKIEDIQLSEEEMDMFMDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVIPKISCRSPVVGILTRHDFMPEHILDLHPFLVRNSGGKSLRF 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1821 701 Pfam CBS domain 632 678 IPR000644 -
Aed6g1821 701 PRINTS Plant CLC chloride channel signature 195 203 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed6g1821 701 PRINTS Plant CLC chloride channel signature 351 367 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed6g1821 701 PRINTS Plant CLC chloride channel signature 209 219 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed6g1821 701 PRINTS Plant CLC chloride channel signature 227 234 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed6g1821 701 SMART cbs_1 632 685 IPR000644 -
Aed6g1821 701 SMART cbs_1 520 573 IPR000644 -
Aed6g1821 701 SUPERFAMILY CBS-domain pair 503 679 IPR046342 -
Aed6g1821 701 Gene3D - 501 680 IPR046342 -
Aed6g1821 701 Pfam Voltage gated chloride channel 67 481 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 Gene3D Clc chloride channel 27 500 - -
Aed6g1821 701 PANTHER CHLORIDE CHANNEL PROTEIN 54 697 - -
Aed6g1821 701 ProSiteProfiles CBS domain profile. 628 689 IPR000644 -
Aed6g1821 701 PRINTS Chloride channel signature 399 419 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PRINTS Chloride channel signature 449 468 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PRINTS Chloride channel signature 110 129 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PRINTS Chloride channel signature 79 96 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PRINTS Chloride channel signature 487 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PRINTS Chloride channel signature 431 447 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed6g1821 701 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 54 697 - -
Aed6g1821 701 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 52 - -
Aed6g1821 701 PANTHER CHLORIDE CHANNEL PROTEIN 10 52 - -
Aed6g1821 701 CDD CBS_pair_voltage-gated_CLC_euk_bac 503 681 - -
Aed6g1821 701 SUPERFAMILY Clc chloride channel 52 502 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1821 Aed-Chr6 21592722 21597593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1821 10 700 Ion Channels AT5G33280 67.282 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1821 K05016 - gmx:100817901 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1821 6 21592722 21597593 Aed6g1821 6 21592722 21597593 ECH