Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1820 ATGGCTTTCACTGCGTTATTATTGGTGCTATTGCTGCAATTGCCAACAATTTTTGGCTCTGAGGTTGTCTTGAAGTCGAAGGATTGTGGCACTGATTGGGTGGCACACTCATATTCTAGTCATGGTCAGGATCTGTTCTACATAAAGGGCAATGTAGTGAACAAAGTTGCTTTCTGTGAGGCTCTCCAATTGTATACTGCAAAGGGGTGTGATGTAAAGGATTACTTTGGAAGTGTCAAATGTGTGATGGATGACTCTTTTGTGAATTTACCTTTAAAGGCAGGGAGGAAACTTTTGCTGGATTCAAGCAGTGAATCCACACCAAAAGGAGATCCTAAGCCTGTGTCATCCAACGTAGTTGGTATTTTTGCTGGGGGAGCTTTGGTGGTGTGTTGTGCTGTTCTTTGTCCTTGTTTCTATGCCAAGAGACGGAAAGCAACTTCTCATGCTGTTCTGGCCAAGGACCCAAATTCAATGGATTCTGTTTCCTCCTTCGAAGCCTCTGTTAACGATAAGATTCCGGCGAGTCCACTTCGGGTGCCACCTAGTCCATCAAGATTCTCAATGTCTCCAAAACTCACTAGACTTCAATCATTGCATCTCAATCTGAACCAAGTTACAAGAGCTACCCATAATTTCTCAGAAACATTGCAAATAGGAGAAGGAGGTTTTGGAACTGTTTACAAGGCCAAGTTAGAAGATGGCCTGGTTGTGGCTGTAAAGCGTGCAAAAAAGGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAGTTGAACTTTTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTAGGTTTTATTGACAAAGGAAACGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTGCATCTAAAGTATAATGATGGCAATGTGGTGGAACTGGTGGATCCTTTAATGGAAGAAGCTGTGAATGCAGATGTTCTGATGAAGATGTTTGATTTGGCTTTTCAATGTGCAGCACCCATTCGAACAGATAGACCAGACATGAAATCAGTGGGCGAGCAATTGTGGGCAATAAGGGCAGATTACCTCAAGAGTGCAAGGAGAGAATAA 1185 0.4245 MAFTALLLVLLLQLPTIFGSEVVLKSKDCGTDWVAHSYSSHGQDLFYIKGNVVNKVAFCEALQLYTAKGCDVKDYFGSVKCVMDDSFVNLPLKAGRKLLLDSSSESTPKGDPKPVSSNVVGIFAGGALVVCCAVLCPCFYAKRRKATSHAVLAKDPNSMDSVSSFEASVNDKIPASPLRVPPSPSRFSMSPKLTRLQSLHLNLNQVTRATHNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRTEFSSEVELLAKIDHRNLVKLLGFIDKGNERLLITEFVPNGTLREHLDGMRGKILDFNQRLEIAIDVAHGLTYLHLKYNDGNVVELVDPLMEEAVNADVLMKMFDLAFQCAAPIRTDRPDMKSVGEQLWAIRADYLKSARRE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1820 394 Pfam Protein tyrosine and serine/threonine kinase 218 328 IPR001245 GO:0004672|GO:0006468
Aed6g1820 394 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
Aed6g1820 394 ProSiteProfiles Protein kinase domain profile. 213 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1820 394 PANTHER OS07G0166700 PROTEIN 8 329 IPR045272 GO:0004714|GO:0006468
Aed6g1820 394 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 8 329 - -
Aed6g1820 394 Gene3D Transferase(Phosphotransferase) domain 1 291 330 - -
Aed6g1820 394 SUPERFAMILY Protein kinase-like (PK-like) 194 327 IPR011009 -
Aed6g1820 394 PANTHER OS07G0166700 PROTEIN 335 393 IPR045272 GO:0004714|GO:0006468
Aed6g1820 394 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 335 393 - -
Aed6g1820 394 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1820 Aed-Chr6 21587769 21591833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1820 120 365 Receptor kinase-like Gene Family AT1G30570 33.465 1.68e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Aed6g1820 PK_Tyr_Ser-Thr 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1820 - - gmx:100305423 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1820 6 21587769 21591833 Aed6g1820 6 21587769 21591833 ECH