Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1801 ATGAATATGAAAGTTGTGGTGAGCATGGAGAACGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGCGTTAGAGGTGCGTGCAAACCTTCAGCTTCCAGAGACTCTCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACTTGAATGCTAGCAATCGAGAAATATGTCCTCCAAATGAAGCTCGATTATCTTCTGATAATCTTGATCCCCCGCCTCAGGAGAATAAGGCTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGGAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTCTTCAAAGGTTGGATTGAGGAAGATGGAACGGCGCCGGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGTTAGTAAAATATCTGCTTTGGGAACCGTCCCGCTTCCGTGGTCCAACAGGATTAAGATTTCCCTTGGTGCAGCTAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGAGTTGTTGGAACTTATGGTTATGCTGCGCCAGAATATGTCATGACTGGTAAGAATGTAGCAGTAAGTAGCTTGAAAGGACAAGAAAACTCTTTAGTATCCAATGCAACACAGGAGCTTCAGTATATGTTGTGCTATAGTTGTATCATTGATTACAATTTCTGCTACAAAGCGGAACATTGTGTAAAGGCAGCACATGCTAATCATTCCAATAGGCATTTGAATCATGCTGAGCTAGTGTGA 945 0.4423 MNMKVVVSMENEKKCGCWAVLKRGVRGACKPSASRDSPNTIPRTSLVYDAATETRYLNASNREICPPNEARLSSDNLDPPPQENKAPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVVSKISALGTVPLPWSNRIKISLGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGKNVAVSSLKGQENSLVSNATQELQYMLCYSCIIDYNFCYKAEHCVKAAHANHSNRHLNHAELV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1801 314 Gene3D Transferase(Phosphotransferase) domain 1 166 259 - -
Aed6g1801 314 Pfam Protein kinase domain 176 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1801 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Aed6g1801 314 PANTHER OS01G0588500 PROTEIN-RELATED 166 255 - -
Aed6g1801 314 PANTHER OS01G0588500 PROTEIN-RELATED 81 165 - -
Aed6g1801 314 PANTHER OS01G0588500 PROTEIN 166 255 - -
Aed6g1801 314 PANTHER OS01G0588500 PROTEIN 81 165 - -
Aed6g1801 314 Gene3D Phosphorylase Kinase; domain 1 79 165 - -
Aed6g1801 314 ProSiteProfiles Protein kinase domain profile. 1 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g1801 314 ProSitePatterns Protein kinases ATP-binding region signature. 111 143 IPR017441 GO:0005524
Aed6g1801 314 SUPERFAMILY Protein kinase-like (PK-like) 81 251 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1801 Aed-Chr6 21428367 21431388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1801 93 252 Glycoside Hydrolase AT3G07070 45.050 1.83e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed6g1801 Pkinase 5.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1801 - - gmx:100785385 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1801 6 21428367 21431388 Aed6g1801 6 21428367 21431388 ECH