Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1799 ATGGATGATCAGCTTCAACTGGGTCTCGCTCTCCCAAACTATCCCTGCTCCAATGACAACCTTAATTCTTCTCATGCTTTCAACCACAAAAAACGAACCTTCTCCCATCCACCAGATAACGATATGCTTCCTACTCTGTCTCTCCTCCCTTTAACCCCAAGCCACCATGATCATCATCATGATGATGACCACAGCCAATGCTCTAACATCACCAATTATAGGGATGAGGGGGAGGAGGAGGAGGAGGGTGTAGTGGGTTGGCCACCCGTTAACTATTGGAGGAAGAAACTTCGTGTGGATCATGCTCCTGCTGCCAATCACATCCAATCTCGACCATCCACGAATACTTCGTACGTCAAGGTCAAGATGGAGGGTGTAGGAATTGCACGGAAGGTTGATCTCGCCATGCACCGATCCTTTCACACGCTCAACCAAATCTTGATGGACATGTTTGCAAAATGTCATCAACAATCAAACACCTATGAACTAGCTTATCAGGACAAAGAAGGTGACTGGCTTCTCGCACAAGATGTACCATGGAGGCAAGTGTATTCATTATTAAGCCTAGGAAAAATAAATTTCGTTGGGTGTGCTCAACGACTTAAATTGGTGAAGAGCAGCAGATAA 627 0.4577 MDDQLQLGLALPNYPCSNDNLNSSHAFNHKKRTFSHPPDNDMLPTLSLLPLTPSHHDHHHDDDHSQCSNITNYRDEGEEEEEGVVGWPPVNYWRKKLRVDHAPAANHIQSRPSTNTSYVKVKMEGVGIARKVDLAMHRSFHTLNQILMDMFAKCHQQSNTYELAYQDKEGDWLLAQDVPWRQVYSLLSLGKINFVGCAQRLKLVKSSR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1799 208 Pfam AUX/IAA family 28 156 IPR033389 -
Aed6g1799 208 Pfam AUX/IAA family 158 207 IPR033389 -
Aed6g1799 208 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 4 206 - -
Aed6g1799 208 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 206 IPR003311 GO:0005634|GO:0006355
Aed6g1799 208 MobiDBLite consensus disorder prediction 49 68 - -
Aed6g1799 208 Gene3D - 112 208 - -
Aed6g1799 208 MobiDBLite consensus disorder prediction 53 68 - -
Aed6g1799 208 ProSiteProfiles PB1 domain profile. 116 197 IPR000270 GO:0005515
Aed6g1799 208 SUPERFAMILY CAD & PB1 domains 108 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1799 Aed-Chr6 21402234 21403075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1799 102 202 B3 DNA Binding Superfamily AT3G61830 29.126 2.27e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed6g1799 AUX_IAA 9.5e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1799 K14484 - gmx:100808466 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1799 6 21402234 21403075 Aed6g1799 6 21402234 21403075 ECH