LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1795	ATGGGAAGGAAAAAGACAGAGGATGCTGGTGGCCCATCTGCGAAGGCCAAGGCTGGTAACAAAGATGCTCCCAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCCAAAAAGGTTGCTTCCAGTAAGCCGAAGCCAAAATCTGGTTCAAAAGCTTCCACATATACTGATGGTATTGATCTTCCTCCATCTGATGATGAAGATGATGATCTCTTGGAAGAGGAAAATAAAGCAGCCAAGCAAAGGCCTGATTTGAAGCCACTTGATGTGCCTATTGCTGAGAAAGAGTTGAAAAAGCGTGAAAAGAAGGATGTTTTAGCTGCATATGCTGCTGAGCAGGCAAAGAAGGAGGCTCTTAGGGATGATCATGATGCTTTCACTGTGGTCATTGGAAGCCGGGCTTCGGTGCTAGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAGCAATAGAAAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTTATGAAAAATGCATCAGTGAAGATATCTCACGGGAAGAGGTATGGTTTGATTGGGCCCAATGGAAAGGGCAAGTCCACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCCAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACGGCTCTTGAAGCTGTTGTTTCAGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTGCCTACCTGCAGAATGCAGCTTCTGCTGAAGAATGTGTAGACAAAGATAACGATGAGGAAGATGATTCAGGAGAGAAGCTAGCAGAGCTGTATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAATCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAAGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTACTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCACACGATAGGGATTTTCTTAATACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTCGATGATTTTGAGAGTGGGTATGAACAGCGTCGTAAGGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAGCCGGGCCCAGCAAGAAAAGGTTAAGGATCGAGCTAAGTTCGCAGCATCTAAGGATAAAAACAAGGGCAAGGGAAAGGTTGACGAGGATGAGGTCCCACCAGAGGTACCTCAGAAGTGGAGGGATTACAGCGTGGAATTTCACTTTCCTGAACCTACTGAGCTCACCCCCCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTCGGTCCTAATGGAGCTGGAAAATCTACGTTGCTGAATCTTCTTGCTGGGGATTTGGTTCCTTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAAGAGGGGCTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCCATTGCCAAACTATCAGGAGGGCAGAAGTCTCGGGTGGTCTTCACATCTATCTCCATGTCAAAACCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATCGATGCATTGGCTGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTCAGTAATCTACCAGAAAATTTGCTTCCCGTTGCTTACTCTAGCCAGATCCATGGTCAGAGCTCCTATTCCTCTGATGACTTGCCCAGGACTGTTGTGATGACTCTCAACCAAGGTTCAATTGTCAAAAGCATGGATTTCCATCCACTTCAGCAAATTCTACTTCTTGGTAAGCCTCTTTTGGTGTGA	2181	0.4443	MGRKKTEDAGGPSAKAKAGNKDAPKKEKISVSAMLASMDEKPDKPKKVASSKPKPKSGSKASTYTDGIDLPPSDDEDDDLLEEENKAAKQRPDLKPLDVPIAEKELKKREKKDVLAAYAAEQAKKEALRDDHDAFTVVIGSRASVLDGEDDADANVKDIAIENFSVSARGKELMKNASVKISHGKRYGLIGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVAYLQNAASAEECVDKDNDEEDDSGEKLAELYEKLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGSRAQQEKVKDRAKFAASKDKNKGKGKVDEDEVPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSNLPENLLPVAYSSQIHGQSSYSSDDLPRTVVMTLNQGSIVKSMDFHPLQQILLLGKPLLV	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1795	726	CDD	ABCF_EF-3	489	666	-	-
	Aed6g1795	726	Pfam	ABC transporter	175	344	IPR003439	GO:0005524
	Aed6g1795	726	SMART	AAA_5	183	388	IPR003593	-
	Aed6g1795	726	SMART	AAA_5	515	724	IPR003593	-
	Aed6g1795	726	Gene3D	-	157	440	IPR027417	-
	Aed6g1795	726	Gene3D	-	458	685	IPR027417	-
	Aed6g1795	726	ProSitePatterns	ABC transporters family signature.	316	330	IPR017871	GO:0005524
	Aed6g1795	726	Pfam	ABC transporter	506	641	IPR003439	GO:0005524
	Aed6g1795	726	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	489	709	IPR003439	GO:0005524
	Aed6g1795	726	CDD	ABCF_EF-3	159	389	-	-
	Aed6g1795	726	MobiDBLite	consensus disorder prediction	425	464	-	-
	Aed6g1795	726	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	6	667	-	-
	Aed6g1795	726	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	159	419	IPR003439	GO:0005524
	Aed6g1795	726	Coils	Coil	408	428	-	-
	Aed6g1795	726	MobiDBLite	consensus disorder prediction	83	98	-	-
	Aed6g1795	726	PANTHER	-	6	667	-	-
	Aed6g1795	726	MobiDBLite	consensus disorder prediction	1	98	-	-
	Aed6g1795	726	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	468	671	IPR027417	-
	Aed6g1795	726	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	159	396	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1795	Aed-Chr6	21365304	21368217	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g1795	488	661	Calmodulin-binding Proteins	AT2G36910	31.313	5.93e-14	73.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1795	K06184		-	gmx:100806865	1129.39