Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1785 ATGTCGAGCTGCACCATCGATGTTGCACCTGAGCAACTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACGTCCAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTTACTGAGGAAAGGGTTGTGAATCGGCGTGAAGAAGCTTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCCCACATTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGAGAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTATTGAATAAATGA 468 0.485 MSSCTIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRREEAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKHLMSRAALLNK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1785 155 PANTHER AXIAL REGULATOR YABBY 5 1 109 - -
Aed6g1785 155 PANTHER PROTEIN YABBY 6-RELATED 108 145 IPR006780 GO:0007275
Aed6g1785 155 PANTHER PROTEIN YABBY 6-RELATED 1 109 IPR006780 GO:0007275
Aed6g1785 155 Pfam YABBY protein 108 128 IPR006780 GO:0007275
Aed6g1785 155 Pfam YABBY protein 9 70 IPR006780 GO:0007275
Aed6g1785 155 PANTHER AXIAL REGULATOR YABBY 5 108 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1785 Aed-Chr6 21279407 21283637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1785 8 138 C2C2-YABBY Transcription Factor Family AT2G26580 57.407 5.86e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aed6g1785 YABBY 2.3e-25 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1785 K25796 - gmx:100804731 290.426