Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1759 ATGCCATGGTCTTATGTCTCTCAACCACACCTCCCTAATGCTAACACTAATATCACTCAACCTTTCTCCGATGTTTTCTCCAGCCGTGGCGGTGGAGGTGGCCATAGGTTCCCTCGTCCACACGATCCTTCTAACCGATTCCCCGTGGAGGAAGCACAAAACGGTGACGTTATTAACTTCGACGCGTACGAGTCTGTCGCGGTGGAGGCGAGTGGGAAGAACGTGCCACCGGCGGTGAACACTTTCTCTGAAACGGACTTAGACGAAGGGCTGAAGCGGAACATCGAGCGATGCAAGTACGTGAAACCCACGCCGGTTCAGCGTCACGCGATTCCCATTGCGTCTGCGGGACGCGACCTAATGGCCTGTGCCCAGACCGGTTCGGGTAAAACGGCCGCGTTTTGCTTTCCCATCATATCTGGGATTTTGAAGGGTCGTTCTCATTCTCGTTCTGGTTTTGGTTCTGGGTTTTCATCAATGCCGCCTCGTGGTACCGTTGTTGCATACCCCACTGCGCTTATTCTGTCTCCTACCAGGGAGCTGTCCTGCCAGATTCGTGATGAAGCGAATAAATTTTCGTCTCAAACTGGAGTGAAGGTTGTTGTTGTCTATGGTGGGGCTCCTATTTTTCAGCAGCTGCGCCTTTTGGAGAGAGGTGTTGACATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATCGAGAGAGAAAGGGTTTCTTTGAAAAAGATCAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGAACATGGGATTTGAACACCAAATACGCAAGATTGTGGAGCAAATGGAGATGCCTCCCCCAGGTATTAGACAAACATTGCTTTTTAGTGCGACGTTTCCTAATGATATACAGAAGCTAGCATCGGACTTTTTGTCCGACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATATGGACAAAAGGGACCATCTGGTTGGTCATTTGCGTCAAAAGGTGCATAGGGCCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACAAAGAAAGGAGCGGATGTTTTAGAAGATTGGTTATTAAGACATGGTTTTTCAGCTATTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGAGCTCTAAGATCCTTCAAATCTGGTTCGACTCCAATTTTGGTTGCAACTGATGTTGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCTAGAGACATAGATGACTACGTGCACAGAATTGGAAGAACAGGGCGTGCAGGCAAATCTGGTTTAGCCACTGCCTTCTTCAGTGACAAGAACAGCCCTATTGCCAAGCCTCTTATTGCACTCTTGAAGGAAGCAAACCAAGAAGTTCCATCTTGGCTCAACCAGTATGCTGAGTCTTCACCATCTGGTGTGCGTGGTCGTGGATATGGAGCTCCACGTTACAGCAGTGGTGGTTATGGTGGTCATGATTTCCGAAGTTTTAATGAACCTGAGGTGCATAATTACAACAATTGCTACAACAGTACTAATGGCAATGAAGATCATGCTGGTGTAGAGTCTTACTCTTATGACATGCAAAACTCGAATATAGAATCCTCTTTTGACAGTTTGAATATAGCTTCTTCTGCGTACAGTTACAATAACACTGGTTCTGGTGATTTGCATGGAGGTGGTAGGGTTGAAGAAGATGGGCCACGTGGTTTTGCATCTATTGTTGCCACTGGATGGGACTAG 1791 0.4673 MPWSYVSQPHLPNANTNITQPFSDVFSSRGGGGGHRFPRPHDPSNRFPVEEAQNGDVINFDAYESVAVEASGKNVPPAVNTFSETDLDEGLKRNIERCKYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKGRSHSRSGFGSGFSSMPPRGTVVAYPTALILSPTRELSCQIRDEANKFSSQTGVKVVVVYGGAPIFQQLRLLERGVDILVATPGRLVDIIERERVSLKKIKYLALDEADRMLNMGFEHQIRKIVEQMEMPPPGIRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLVGHLRQKVHRANGKHALTLVFVETKKGADVLEDWLLRHGFSAIAIHGDKVQMERERALRSFKSGSTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPIAKPLIALLKEANQEVPSWLNQYAESSPSGVRGRGYGAPRYSSGGYGGHDFRSFNEPEVHNYNNCYNSTNGNEDHAGVESYSYDMQNSNIESSFDSLNIASSAYSYNNTGSGDLHGGGRVEEDGPRGFASIVATGWD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1759 596 Pfam DEAD/DEAH box helicase 104 295 IPR011545 GO:0003676|GO:0005524
Aed6g1759 596 Gene3D - 41 307 IPR027417 -
Aed6g1759 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Aed6g1759 596 SMART ultradead3 99 321 IPR014001 -
Aed6g1759 596 CDD SF2_C_DEAD 318 453 - -
Aed6g1759 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 458 IPR027417 -
Aed6g1759 596 SMART helicmild6 363 444 IPR001650 -
Aed6g1759 596 MobiDBLite consensus disorder prediction 1 26 - -
Aed6g1759 596 Pfam Helicase conserved C-terminal domain 344 444 IPR001650 -
Aed6g1759 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 306 IPR014001 -
Aed6g1759 596 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 524 - -
Aed6g1759 596 MobiDBLite consensus disorder prediction 1 49 - -
Aed6g1759 596 Gene3D - 308 486 IPR027417 -
Aed6g1759 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 483 IPR001650 -
Aed6g1759 596 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 44 524 - -
Aed6g1759 596 CDD DEADc_DDX3_DDX4 81 312 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1759 Aed-Chr6 21109757 21112333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1759 80 454 Eukaryotic Initiation Factors Gene Family AT3G13920 33.867 4.59e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1759 K11594 - gmx:100791226 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1759 6 21109757 21112333 Aed6g1759 6 21109757 21112333 ECH