Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1754 ATGGACGAAGAATCGCTGAAGCCCTACACCGATTGCGTTTATTTCCTGGCCTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGCCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGCTATCTGGCCAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCATTGGATGGGCATACTGGAGTGCCAGTGCCATCTGAACCTACTCAAACTTCATTACCTCCAAACAAAACAATGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATGATGGCACTTTTACTGTAAAACCGGTGAAGAATGACAATGGCAGCATTGATGCACTCACCATAGAAAATAAAACATCATCTGGAAATAGAACAGGCGTAGTGTCAACACCAACTGACCGATCTGTAGCTGCTCCAAAGAATTTGTCTGATCTTAAACTTCAGCCTAAGGAAGATCATCAGCTAGAATCACCCAAAAATGTTAAGCAGCAAGGTGATTGCCTAGAGACATCTGCTTTAGAATATAAAGAAGCTGCAGTGAGTAGGTCAGGCTCTTCAGGTTCAGATAATGGTTTTGTTCACAATGTACCTCAGTTGTGCACTGAGCAGAGTTCAGAGGAGCAAGTAAATAGTCACATAGAGCCTGAAGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAATTGGAGAACTTGGGTTATGAGGAAGATGCTGAATATTTACCTGTGCTTGATAGGGATGAGCAAGAGCTGAATGGCCAATACTTCGGGTATGAATTTAAAGATCCAGTTGAGTATGATACTATGTGCCCAGAAGCTGATATTCTGTATGAACAAGAAACATATGATGGTTACAGATGTTTAGATAGAGATCTTACTCATGCTAATGGCAGAACAGTTCATGCTTATTCCAGAGATATATTCTTAGATTCTATATTGTCCAGGAAAAGGATTCGGACATCAGCTGAGATGGCTGCTTATGACAAGAATTTAGATCTTCGTGACCATCTGAGGAGACGTAGAGAAATTAATGGTCCTCCTCCTGTTACAGGTTTCTTAAGAAGACAAGAATCATCTCCTTTGATGGTTCGAAACCAGGAAAGGCATCAGAGGAATGGCATTGAGCAGCAGCCAGGTAGAAGATTGACATCACAACTGGGATATAGCGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAAGCACAGGTTATTCAGGCATTCCCAGCAACAGAGACCAAGGAAGCAGCATTATAAAGAAAAACTACCTAATCGGCAGTTTCTTTCATCATCTAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGATTTTTTCACAAGTCCTCTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGCAGAACGCCGAAGGAAGTTTCCATTGGAAAAGCACACCAACTGATTTCCAGGATCCCAAACCTCTAAGTGAAATTCTCAAGGACAAAAGGCCCATGGATCAGTGA 1584 0.4211 MDEESLKPYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGVPVPSEPTQTSLPPNKTMVPCYFFFNGFCNKGDRCSFLHGPDDGTFTVKPVKNDNGSIDALTIENKTSSGNRTGVVSTPTDRSVAAPKNLSDLKLQPKEDHQLESPKNVKQQGDCLETSALEYKEAAVSRSGSSGSDNGFVHNVPQLCTEQSSEEQVNSHIEPEERWESSPHSPGFDVLVHDELENLGYEEDAEYLPVLDRDEQELNGQYFGYEFKDPVEYDTMCPEADILYEQETYDGYRCLDRDLTHANGRTVHAYSRDIFLDSILSRKRIRTSAEMAAYDKNLDLRDHLRRRREINGPPPVTGFLRRQESSPLMVRNQERHQRNGIEQQPGRRLTSQLGYSAIDSIGEVETLSIANKHRLFRHSQQQRPRKQHYKEKLPNRQFLSSSKISRKPVFKQRGFFHKSSTFSGPKTLAEIKEEKKKQNAEGSFHWKSTPTDFQDPKPLSEILKDKRPMDQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1754 527 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Aed6g1754 527 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Aed6g1754 527 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Aed6g1754 527 Pfam Zinc-finger containing family 10 63 IPR041686 -
Aed6g1754 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 109 IPR000571 GO:0046872
Aed6g1754 527 MobiDBLite consensus disorder prediction 477 527 - -
Aed6g1754 527 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Aed6g1754 527 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Aed6g1754 527 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Aed6g1754 527 MobiDBLite consensus disorder prediction 484 498 - -
Aed6g1754 527 Gene3D - 75 148 - -
Aed6g1754 527 Gene3D - 2 63 - -
Aed6g1754 527 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Aed6g1754 527 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 523 - -
Aed6g1754 527 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1754 Aed-Chr6 21087784 21091317 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed6g1754 zf-CCCH_3 1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1754 - - gmx:100792282 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1754 6 21087784 21091317 Aed6g1754 6 21087784 21091317 ECH