Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1750 ATGAGTTTCTCTGACCATATTCCATCCTTTATGATGTCACCGACGTCATTTTCCACAGACACAGATGCCATTGAAGTGAGGCTTCAATTCCCAATGAACAGTGAACCGTTGGAGCCACATTCACCACAGGATCAACCCCCTTCGTTCAAGAGGGCAAGGACCTGTGATAACAGCCTCTCCAATTCAATGGCATGCCCTCCAAGGATGATTCAGCAGCATCCAACAATGAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATTTGTGCAAAGTTCAGAGTTGGGGCTTGTAGGAACGGTGAGAACTGCAACTTTGCACATGGGGCTGAAGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCAATGAGGAGCGACAACCGGCCGGGGCCGTGGATTGGGATGATGATCAGAAAATCATACACAAGATGAAGCTCTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCTAGGTTCAGGGATGATTCGGGGAGGTACAGGGAGAGCACAGCTATAAGCATTGGAACTAACGGATCCCCCAAGTCCTATGGTGATAATTCAGAATGTAATCGGGTTCTGAACACCGGCTTAAATGTTTCCCGGGGAAATGTTAAGTCTACCTATTGGAAGACCAAACTCTGCATCAAATTTGAGACAACAGGCTACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTGCATGCTCCTGGCGGATGCACTGAGGCTGAAATTGCAGGTGTCATTCCAATTTCAACTAAGGCTACAATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGATGCAGCTCCTGGCCACAGAGCAAGTGTATCTCCAGCAAATGAAGAGGAGCAGGCTAAGAAGTATTTACTGAAGTGGAAAGGACACAGAAAGATCAACCTTATTTATGGTGATTGGCTCGACGATTTGCCGCTTGTTCACAACTTGCCAGTTGCCAGGTAG 1035 0.4744 MSFSDHIPSFMMSPTSFSTDTDAIEVRLQFPMNSEPLEPHSPQDQPPSFKRARTCDNSLSNSMACPPRMIQQHPTMNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGAEDMRQPPPNWQELVGLRNEERQPAGAVDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSGRYRESTAISIGTNGSPKSYGDNSECNRVLNTGLNVSRGNVKSTYWKTKLCIKFETTGYCPFGDDCHFAHGQAELHAPGGCTEAEIAGVIPISTKATIPTLPRATSVSSNDAAPGHRASVSPANEEEQAKKYLLKWKGHRKINLIYGDWLDDLPLVHNLPVAR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1750 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Aed6g1750 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Aed6g1750 344 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 335 IPR045877 GO:0003729
Aed6g1750 344 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Aed6g1750 344 Pfam CCCH-type zinc finger 150 171 IPR041367 -
Aed6g1750 344 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Aed6g1750 344 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Aed6g1750 344 MobiDBLite consensus disorder prediction 33 55 - -
Aed6g1750 344 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Aed6g1750 344 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Aed6g1750 344 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Aed6g1750 344 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Aed6g1750 344 Gene3D - 77 115 - -
Aed6g1750 344 Gene3D - 144 175 - -
Aed6g1750 344 Gene3D - 220 258 - -
Aed6g1750 344 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 335 - -
Aed6g1750 344 SUPERFAMILY CCCH zinc finger 224 257 IPR036855 GO:0046872
Aed6g1750 344 SUPERFAMILY CCCH zinc finger 146 173 IPR036855 GO:0046872
Aed6g1750 344 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1750 Aed-Chr6 21070047 21071863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1750 228 256 C3H Transcription Factor Family AT1G68200 62.069 6.83e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed6g1750 zf-CCCH 2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1750 - - gmx:100780649 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1750 6 21070047 21071863 Aed6g1750 6 21070047 21071863 ECH