Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1731 ATGAAGGGGGAAGTGCAGCTTCAGCCTCCAGCGGTTATGCAAAACCCTAGTGATTCAGACCCTTTGCTCCAGGATGAGTCACCGGGAAGCTCTGGTGAGATCAAGGATGAGGATGAAGACGTTGAGGCTGGCTTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCAGCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCCGAGTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTGATTGCAGCTATTGGTGGCTTTGCGTACGTCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATAGCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTTGTAA 915 0.4557 MKGEVQLQPPAVMQNPSDSDPLLQDESPGSSGEIKDEDEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCSTCKAQFHLRVESFEDNSWRKIKFRVFVARDVFLVFLAVQTVIAAIGGFAYVMDKDGSFRNSFDDGWDRILSRHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHEGRLKMLKLL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1731 304 MobiDBLite consensus disorder prediction 10 26 - -
Aed6g1731 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 112 IPR013083 -
Aed6g1731 304 SMART ringv_2 48 100 IPR011016 GO:0008270
Aed6g1731 304 ProSiteProfiles Zinc finger RING-CH-type profile. 41 106 IPR011016 GO:0008270
Aed6g1731 304 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 304 - -
Aed6g1731 304 SUPERFAMILY RING/U-box 47 104 - -
Aed6g1731 304 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 304 - -
Aed6g1731 304 MobiDBLite consensus disorder prediction 1 38 - -
Aed6g1731 304 CDD RING_CH-C4HC3_MARCH 49 100 - -
Aed6g1731 304 Pfam RING-variant domain 49 99 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1731 Aed-Chr6 20949436 20953656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1731 1 304 C3H Transcription Factor Family AT1G11020 78.816 1.87e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1731 - - gmx:100818950 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1731 6 20949436 20953656 Aed6g1731 6 20949436 20953656 ECH