Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1729 ATGGAAAAGAAAAAGGTAGCAGTTCCCCTCGTGTGCCACGGTCACTCTCGCCCCGTGGTTGATCTCTTCTACAGTCCTGTTACGCCCGATGGGTTTTTCCTCATCAGTGCCAGCAAGGATTCTAGTCCTATGCTCAGAAATGGAGAGACCGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCTGTATGGAGTTGCTGCTTGGATACCAATGCCTTACGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCTTTAACAGGAGATGAATTGCACTGTTTTGAGCATAAGCACATTGTTCGAGCATGCGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGTTGAGAAAATTCTCCGAATCTATGATATGAATCGACCTGATGCACCGCCCAGAGAAGTGGATAAATCCCCTGGTTCTGTCAGAACTGTTGCTTGGCTTCATAGTGACCAAACAATACTGAGTTCTTGTACTGATATGGGAGGTGTCAGCTATGGATTGGTGAAGAGTTATGATATGCCCTGCACTGTGGAATCAGTTTCACTGGAGCCTAAGTATGGGAACAAGTTTGTTGCCGGGGGAGAAGATATGTGGGTTCATGTGTTTGATTTCCATACAGGGAATGAGATTGCATGCAACAAGGGGCACCACGGTCCTGTCCACTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACTGGCCCATTGACTCTCGATGACTCGGAGACCGTGTCTGCAAATGGTTCAATTGATAAGGTGAAGGTAACTGCAGATGAGGTTTCGCGCAAGATTGAGGGTTTTAATATTGCAGATGAGGGGAAATCTAAAGAAAAGGATGAGGCTGTGGAGGAATCAAGCTAA 921 0.4669 MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHCFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVSYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSETVSANGSIDKVKVTADEVSRKIEGFNIADEGKSKEKDEAVEESS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1729 306 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 252 - -
Aed6g1729 306 Gene3D - 173 295 IPR015943 GO:0005515
Aed6g1729 306 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Aed6g1729 306 SUPERFAMILY WD40 repeat-like 6 253 IPR036322 GO:0005515
Aed6g1729 306 SMART WD40_4 171 210 IPR001680 GO:0005515
Aed6g1729 306 SMART WD40_4 213 252 IPR001680 GO:0005515
Aed6g1729 306 SMART WD40_4 5 47 IPR001680 GO:0005515
Aed6g1729 306 SMART WD40_4 92 130 IPR001680 GO:0005515
Aed6g1729 306 SMART WD40_4 50 89 IPR001680 GO:0005515
Aed6g1729 306 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Aed6g1729 306 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Aed6g1729 306 Pfam WD domain, G-beta repeat 218 251 IPR001680 GO:0005515
Aed6g1729 306 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 252 IPR001680 GO:0005515
Aed6g1729 306 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 172 299 - -
Aed6g1729 306 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 170 - -
Aed6g1729 306 PANTHER OS02G0205400 PROTEIN 172 299 - -
Aed6g1729 306 PANTHER OS02G0205400 PROTEIN 1 170 - -
Aed6g1729 306 Gene3D - 9 166 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1729 9 250 Eukaryotic Initiation Factors Gene Family AT2G46290 24.528 7.18e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1729 K13137 - gmx:100818422 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1729 6 20924440 20930580 Aed6g1729 6 20924440 20930580 ECH