Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1725 ATGACGATGGACGACGATAGCTCCATATATGTAGGGGGTCTTCCCTACGACGCCACCGAAGAAACCATTCGCACTGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGATAATCAACGATCAACGCACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAACCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGGCTCGTGGGGGCAGGCCAAATTTTGGCAGAGAACGTTATTATTATCATAATGATGAGAGGAATGGAGATTGGGATCGCGGAAGAGACCGAGACCGAGATTATGACCATGATAATAATGATAGGGATGGATATAGGAATCGGAGCAGTGATTGGGTTCGAGACCATGATAGGCCTCGAGACCGTGATCAGGACAGGGATAGAAGGTTTGAGCACATGCATGATTATGATCAAGATAGAGAACCTATATTAGATAATGACTGGGATCGAGAGGATGATAGAGTTGAAAATGAACAAGAACATAGCAGGGGACATGGTGGAGACGTGGATAGAGATCACAACATAGATTTGAATGTAGACAGGAAAATGGATAGGACCAGTGATCCTGATAGAAGTTTTGATGAGGATAGAAAAGATCGGTCAAGGAGGAACAATGACTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGATTCAACTGATACTCACAATGATCAGGTGGAAGCTCAATTAGAGAGGTCAACTCAACAGCTTGATCAACTAAAAAAAGGAGTCTTCCAATTCCAACTAACAAGTCCTCTAGCCCTTTATATGTTATTTTTTCCTCTGCTATGTGTTGATGATGCTGGAAAATGGAAATTCTTGGCTTGTCAGGTTTCTCATATGGAAGAGGGATTGGAAAATAAAAGACTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACTCTTCATATCGTCAGATGCAATTGACGAAGCTGCATAAATGTTTTTTGCAAGTGAAAGATTGCACAGAAAGACTTAAAACTAGTGAAAAAGAACTTCAGGCTCTAATTGATACAGCAATGTCGGAGATTGATGCTGATGGTGTTGGATTAAAGGATGGACAACTAACAAATGGAAGTCTTGATGGTAGATTGTAA 1206 0.4096 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRARGGRPNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNNDRDGYRNRSSDWVRDHDRPRDRDQDRDRRFEHMHDYDQDREPILDNDWDREDDRVENEQEHSRGHGGDVDRDHNIDLNVDRKMDRTSDPDRSFDEDRKDRSRRNNDLNVTNQHSMDLSSDSTDTHNDQVEAQLERSTQQLDQLKKGVFQFQLTSPLALYMLFFPLLCVDDAGKWKFLACQVSHMEEGLENKRLHVKELQKQSKKLEDALINAKKNSSYRQMQLTKLHKCFLQVKDCTERLKTSEKELQALIDTAMSEIDADGVGLKDGQLTNGSLDGRL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1725 401 MobiDBLite consensus disorder prediction 229 250 - -
Aed6g1725 401 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Aed6g1725 401 Coils Coil 355 375 - -
Aed6g1725 401 CDD RRM_SF 9 80 - -
Aed6g1725 401 MobiDBLite consensus disorder prediction 102 228 - -
Aed6g1725 401 MobiDBLite consensus disorder prediction 102 250 - -
Aed6g1725 401 Coils Coil 303 337 - -
Aed6g1725 401 Coils Coil 248 268 - -
Aed6g1725 401 SMART rrm1_1 8 80 IPR000504 GO:0003723
Aed6g1725 401 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 272 - -
Aed6g1725 401 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 299 396 - -
Aed6g1725 401 Gene3D - 2 97 IPR012677 -
Aed6g1725 401 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 272 - -
Aed6g1725 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Aed6g1725 401 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 299 396 - -
Aed6g1725 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1725 Aed-Chr6 20889882 20893417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1725 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 6.06e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1725 - - gmx:100816804 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1725 6 20889882 20893417 Aed6g1725 6 20889882 20893417 ECH