Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1724 ATGGCATCACCATCAGAACTAAGCCTTGATTGCAAGCCACAAAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCTGTGGAGGCTTCAAGGCATCAGCTTCAGGCGTTTAAAGTAAACCATCATGGCGGCACAAAGCCAGTTCTGGAAGAATTCATACCGATGAAGCACTTAGCCTCAGAAAGCTCAGAGAAAGCAACAAACATGTCTGGTGACAAGGCAAATTGGATGACATCTGCACAACTGTGGAGCCAAGCAAGCGAAGGATTAATTACCAAACAGCAACAAGGAACAATAATCACAACAACAACCCCTCCTAAAGAATCTTCTGAATTAGGGTTCAGCATAAGCCCGAAGCTGGGTCTAGATCACAACAAACAACAGAGGAACGGTGGAGGAGCATTCCTTCCATTCTCAAAAGAGAGAAACAACGTCTCCTTCCAAGGCTCTTCTACATTAATGCGGCCTCTCCCTGAACTGGCCCTTGCAGCCTCTTCGGAGAAAGAAAATAATATTATGGAGGACAACAACAAGAAACTACGTGCAGAACATCAGTTTTCAGAAAAGGGAGGAGTTTCATCATGTCAGAATAATAAGAAGGAGAATTCAGGAGTTAGCGATGGAGCTGTGGTTGATCAAGGAAAAAGTGGTAGCCCAGTTGCATCATCATCTCATGCACAAACCACAACAACCACAACCACTACTACTACACAAACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGAAGATTTGTGAATGCCCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAAACGGGTGGAGCAACGCCACAGCTTGTGGTCCTCGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCGGCACACACAGCCACCCCTACTCTCTACGGCGCCCACCCTACCTCCCACGCGCCGCCGCACTACTGCGCTGCAACTCCCATGGCGCCACAAGACTTCTACACCACGGCGCCGCAGCAGCAGCTGCTTCCGCCGCCTCCACCGCACCACCACAACGCGCTGCACCACCTGCACATGTACAAGTCGGCGGCACACGGGCACGGCTCGCCGGAATCCGACGTTCCCGGCGGCGGGGAGCGGTCGGAGAGCATCGAGGACGGGAAATCGGAGAGTAGCAGCTGGAAGGGGGAGAGTGGGGAGAACGAAGGGGAGAGAAAGGGGATTGGTGAAGAGAGCAATGGGAGTGAGATCACTCTCAAATTCTAG 1464 0.5061 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRHQLQAFKVNHHGGTKPVLEEFIPMKHLASESSEKATNMSGDKANWMTSAQLWSQASEGLITKQQQGTIITTTTPPKESSELGFSISPKLGLDHNKQQRNGGGAFLPFSKERNNVSFQGSSTLMRPLPELALAASSEKENNIMEDNNKKLRAEHQFSEKGGVSSCQNNKKENSGVSDGAVVDQGKSGSPVASSSHAQTTTTTTTTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGGATPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPHYCAATPMAPQDFYTTAPQQQLLPPPPPHHHNALHHLHMYKSAAHGHGSPESDVPGGGERSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1724 487 MobiDBLite consensus disorder prediction 227 242 - -
Aed6g1724 487 Coils Coil 33 53 - -
Aed6g1724 487 Pfam Myb-like DNA-binding domain 282 333 IPR001005 -
Aed6g1724 487 SUPERFAMILY Homeodomain-like 277 338 IPR009057 -
Aed6g1724 487 MobiDBLite consensus disorder prediction 254 280 - -
Aed6g1724 487 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 280 335 IPR006447 GO:0003677
Aed6g1724 487 MobiDBLite consensus disorder prediction 429 487 - -
Aed6g1724 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 277 337 IPR017930 -
Aed6g1724 487 MobiDBLite consensus disorder prediction 222 282 - -
Aed6g1724 487 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 487 IPR044787 GO:0003700|GO:0006355
Aed6g1724 487 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 487 - -
Aed6g1724 487 MobiDBLite consensus disorder prediction 444 477 - -
Aed6g1724 487 Coils Coil 201 221 - -
Aed6g1724 487 Gene3D - 279 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1724 Aed-Chr6 20885397 20888897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1724 1 487 G2-like Transcription Factor Family AT2G03500 48.444 9.10e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed6g1724 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1724 - - gmx:100807925 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1724 6 20885397 20888897 Aed6g1724 6 20885397 20888897 ECH
Aed6g1724 6 20885397 20888897 Aed10g1211 10 11811416 11814943 PCT