Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1689 ATGGCAGAAGCAGAAGACACCCTTCAAGCCTCACCTATGAACGAAACCACGAAGAAGATGAAGAAGAATAAGAAGAAGAGCGACAAAAAAAGGCCTCGTGATATTGCTACAGAGGAGCGTCCAGAGGAAGAGGAGAATGAGAACAATACAGACAGCGATGGAGAATCCTCGAAGAAGAAGAAGAAGGTGGAAGGAGAAAGTGAAGTGGGAGAGAAAAAGGTGAAGAGCAACGGTGGCTCTGGAATTATGAGTACTGAATCATTTGAATCCCTGGGATTGTCTGAACCTACTTATAAATCCATTATGGATATGGGATTTCACAACATGACTCAGATTCAAGCGAGGGCAATTCCGCCACTTTTGATTGGAAAAGATTTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCTTTCTTAATTCCTGCTGTGGAGCTGTTGTATAATGTTAAGTTTACACCTCGTAATGGAGCTGGTGTTATTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCAAAGGAGCTGCTCAGGTATCATTCACAAACTCTTGGATTGGTTATCGGAGGATCAGCTAGAAAAATCGAAGCTGAACGCATTGCTAAAGGCTTAAATCTTTTGGTAGCAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATTTAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATCTTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAGCTCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACACAGACAAAGACGGTTGAGGATCTTGCTCGTCTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAACGAAGGGTTGCTCCAGGGTTATGTTGTTGTACCCTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTTATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACATTCTTAATCTCATTCAGTTGAATTGCTCGAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACTACTACCTTCTTTGACTTCTGCAAAGCAGAAACTGGGATCTTGCTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTTCTGTGGACTGGATTGTACAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAACGTAAAATCTCACCTGGAGAATTTGGTAGTCAACAATTTTTATCTGAACAAGATGGCGAAAGAAGCTTATAGATCATACATTTTAGCATACAACTCTCATTCCATGAAGGATATATTTAATGTTCAACGTCTGGATATGCAGCAAAGGAAGAACACGCGTAGAGTTGATGGAAGTAGACATGGATTCAACGACAACAATCCTTATGGAAAGAGAAATGCTGATGATAAGCGCCAGTTTGTGAGGCACTAG 1650 0.4145 MAEAEDTLQASPMNETTKKMKKNKKKSDKKRPRDIATEERPEEEENENNTDSDGESSKKKKKVEGESEVGEKKVKSNGGSGIMSTESFESLGLSEPTYKSIMDMGFHNMTQIQARAIPPLLIGKDFLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLRYHSQTLGLVIGGSARKIEAERIAKGLNLLVATPGRLLDHLQNTKGFIFKNLKCLMIDEADRILEANFEEEMKQIIKLLPKNRQTALFSATQTKTVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAETGILLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVKSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVQRLDMQQRKNTRRVDGSRHGFNDNNPYGKRNADDKRQFVRH 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1689 549 Gene3D - 307 529 IPR027417 -
Aed6g1689 549 CDD SF2_C_DEAD 307 437 - -
Aed6g1689 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 292 IPR014001 -
Aed6g1689 549 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 54 511 - -
Aed6g1689 549 SMART helicmild6 346 427 IPR001650 -
Aed6g1689 549 Gene3D - 7 296 IPR027417 -
Aed6g1689 549 SMART DUF4217_3 467 518 IPR025313 -
Aed6g1689 549 Pfam DEAD/DEAH box helicase 110 281 IPR011545 GO:0003676|GO:0005524
Aed6g1689 549 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 238 246 IPR000629 -
Aed6g1689 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 448 IPR027417 -
Aed6g1689 549 SMART ultradead3 105 310 IPR014001 -
Aed6g1689 549 PANTHER RNA HELICASE 54 511 - -
Aed6g1689 549 MobiDBLite consensus disorder prediction 1 88 - -
Aed6g1689 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 476 IPR001650 -
Aed6g1689 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Aed6g1689 549 Pfam Helicase conserved C-terminal domain 322 426 IPR001650 -
Aed6g1689 549 Pfam Domain of unknown function (DUF4217) 469 514 IPR025313 -
Aed6g1689 549 CDD DEADc_DDX18 97 294 IPR044773 GO:0003724|GO:0005524
Aed6g1689 549 MobiDBLite consensus disorder prediction 517 549 - -
Aed6g1689 549 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1689 Aed-Chr6 20589772 20594060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1689 86 445 Eukaryotic Initiation Factors Gene Family AT3G13920 31.044 3.38e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1689 K13179 - gmx:100798885 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1689 6 20589772 20594060 Aed6g1689 6 20589772 20594060 ECH