Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1678 ATGGAAAACACAGACACATCAAAATTCTCACACCAGTCTCAAAACCAAAACAAGAATAATCTTCCCTTGATGCCTATTGAAATAGACAAGTCCTATGAGAAGAAAGTCATGAAGGTTAATCCAAAAGTAGCAAACAAGAGTGAGAAAAAGTTTCTTGGAGTGAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAAGACTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAGGCTGCTATGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACAGTACTCATCATGAAGAAGATTATTGCAGCATTTTGGGTAAGAATCCAAGGGCTTACCAACTTCTTAAGCATGCAGTCATGAAGAACAACCATGCACTTTCAACATCTCTTTATTATTCCACAGTCATGCCTTGGAAAAACCAGATCATGATGAGAGACTACGAATCTGATACCCTTAATGTTGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGAAGGCTCTGCTGGCTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCATTCAGTGCTTCTCATAATCAGTAG 654 0.393 MENTDTSKFSHQSQNQNKNNLPLMPIEIDKSYEKKVMKVNPKVANKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAAMAYDCAARLLRGRNAKTNFPNPGIMNSTHHEEDYCSILGKNPRAYQLLKHAVMKNNHALSTSLYYSTVMPWKNQIMMRDYESDTLNVEETIVCSIPEQEGSAGCCGISFGSSKVYSSVVVAPSFSASHNQ 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1678 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 217 - -
Aed6g1678 217 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Aed6g1678 217 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Aed6g1678 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 217 - -
Aed6g1678 217 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Aed6g1678 217 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Aed6g1678 217 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Aed6g1678 217 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Aed6g1678 217 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g1678 217 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Aed6g1678 217 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1678 Aed-Chr6 20534944 20535597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1678 50 108 AP2-EREBP Transcription Factor Family AT5G19790 72.881 4.83e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed6g1678 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1678 - K09286 gmx:100800716 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1678 6 20534944 20535597 Aed6g1678 6 20534944 20535597 ECH