Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1670 ATGGCACAAGATACTGCTTCTGGTGTTGACTCGCCTCGGCGACGTCTATTACGAGATCAAGTTCAAGTGGTTAAAAGAAAGGATTCTGATCGCTATGAAATTGTTCCTATCCAAGATTCTCTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGTGAAAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGCGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCCAAACAGCGCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGCGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTAAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACATATGTTCAGGTGCAAGGAAAAGACAGAAACTATTGCAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAACGATGTGATGGGAGTCATCACTCAGCTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAGTTCACCTCCCGCATTGAAGAGCTGAATTCAAAGTTTGCTGTCAGAAAAGATTCAGCAGCCAGTCAACAAAACTTGGCTTTACAAGCTGAAGCATGCAATGGCTCAGGCCCCACTTCCTTCTTTATCGCAGAGAGAAAGAGAGAGATGGGGAGCGACAGCGAGGCAGAGAAGTCGGTGCAGAAGGAGAAGGAGAAGAAGAAGATACTGGCGCTCGCTCCCATTGCTAAACCCCTTGCTGGGAAGAAGCTTTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCCGAACACAAATGCTTGAAAAGAGGAGTGAAGGAGGTTGTTAAAAGTATAAGGAAAGGTCATAAAGGATTGTGTGTGATTGCTGGAAACATATCTCCGATTGATGTCATCACTCATGTTCCTATTCTCTGTGAAGAGTCTGACATTCCTTATATTTACGTCCCATCTAAAGAAGACCTTGCAGGCGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTGCAGACAAAGCCTGCAAAGGGTGAATTAGAGAAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTGTCTGAAGTTACGGAGGTTACAGCTTCACTCTTTTGA 1869 0.4179 MAQDTASGVDSPRRRLLRDQVQVVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHLKIINKFNPFSGFQNPTYILKSARAVTVDQIKAVIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMGVITQLSDQISTLNERMDEFTSRIEELNSKFAVRKDSAASQQNLALQAEACNGSGPTSFFIAERKREMGSDSEAEKSVQKEKEKKKILALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRKGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVPSKEDLAGAGATKRPTCCVLVQTKPAKGELEKGEQEKLKSDYDQVVSEVTEVTASLF 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1670 622 PANTHER URIDINE KINASE 8 408 - -
Aed6g1670 622 PANTHER URIDINE KINASE 406 463 - -
Aed6g1670 622 Pfam CYTH domain 252 384 IPR023577 -
Aed6g1670 622 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 505 589 IPR004038 -
Aed6g1670 622 CDD UMPK_like 66 219 - -
Aed6g1670 622 ProSiteProfiles CYTH domain profile. 228 390 IPR023577 -
Aed6g1670 622 Gene3D - 234 388 - -
Aed6g1670 622 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 8 408 - -
Aed6g1670 622 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 406 463 - -
Aed6g1670 622 SUPERFAMILY CYTH-like phosphatases 240 387 IPR033469 -
Aed6g1670 622 Coils Coil 401 428 - -
Aed6g1670 622 SUPERFAMILY L30e-like 487 596 IPR029064 -
Aed6g1670 622 Gene3D - 482 616 IPR029064 -
Aed6g1670 622 Gene3D - 65 150 IPR027417 -
Aed6g1670 622 Gene3D - 151 225 IPR027417 -
Aed6g1670 622 PRINTS Ribosomal protein L7A/RS6 family signature 517 531 IPR018492 -
Aed6g1670 622 PRINTS Ribosomal protein L7A/RS6 family signature 536 549 IPR018492 -
Aed6g1670 622 PRINTS Ribosomal protein L7A/RS6 family signature 552 562 IPR018492 -
Aed6g1670 622 PRINTS Ribosomal protein L7A/RS6 family signature 562 576 IPR018492 -
Aed6g1670 622 PRINTS High mobility group-like nuclear protein signature 490 503 IPR002415 GO:0003723|GO:0005730
Aed6g1670 622 PRINTS High mobility group-like nuclear protein signature 503 518 IPR002415 GO:0003723|GO:0005730
Aed6g1670 622 PRINTS High mobility group-like nuclear protein signature 520 530 IPR002415 GO:0003723|GO:0005730
Aed6g1670 622 PRINTS High mobility group-like nuclear protein signature 564 576 IPR002415 GO:0003723|GO:0005730
Aed6g1670 622 Pfam Phosphoribulokinase / Uridine kinase family 67 216 IPR006083 GO:0005524|GO:0016301
Aed6g1670 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 216 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1670 Aed-Chr6 20485591 20495021 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1670 65 318 PRT Gene Family AT5G40870 23.675 3.17e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1670 K00876 - gmx:100803122 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1670 6 20485591 20495021 Aed6g1670 6 20485591 20495021 ECH
Aed10g1681 10 21511680 21527269 Aed6g1670 6 20485591 20495021 PCT