Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1668 ATGGGGAGCGACAGCGAGGCAGAGAAGTCGGTGCAGAAAGAGAAGGATAGGAAGAAGATGCTAGCACTCGCTCCCATTGCTAAGCCCCTTGCTGGGAAGAAGCTCTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCCGAACACAAATGCTTGAAAAGAGGAGTGAAGGAGGTTGTTAAAAGTATAAGGAAAGGTCATAAAGGATTGTGTGTGATAGCTGGGAACATATCACCGATTGATGTTATCACTCATGTTCCTATTCTCTGTGAAGAGTCTGACATTCCATATGTTTATGTCCCATCTAAAGAAGACCTTGCAGGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTACAGACAAAGCCTGCGAAGGGAGAATTAGAACAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTATCTGAAGTTACTGAGGTTACAGCTTCACTTTTTTAA 474 0.4388 MGSDSEAEKSVQKEKDRKKMLALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRKGHKGLCVIAGNISPIDVITHVPILCEESDIPYVYVPSKEDLAGAGATKRPTCCVLVQTKPAKGELEQGEQEKLKSDYDQVVSEVTEVTASLF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1668 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Aed6g1668 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Aed6g1668 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Aed6g1668 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Aed6g1668 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Aed6g1668 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Aed6g1668 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Aed6g1668 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Aed6g1668 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 124 IPR004038 -
Aed6g1668 157 Gene3D - 17 152 IPR029064 -
Aed6g1668 157 PANTHER - 2 155 - -
Aed6g1668 157 SUPERFAMILY L30e-like 21 132 IPR029064 -
Aed6g1668 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1668 Aed-Chr6 20476848 20478630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1668 52 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 30.137 2.97e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1668 K11129 - gmx:100305515 303.138