Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1662 ATGGCAGATGTAACCAGCACTTACCTCCGGCACCACCATGACCCCGACGATGACCAAACCTTAATCCCTTTCCCCTATTGGGATTTGGACTTCGATTTCGACCCCGAATTTCCCCCCAACCCTTTCTCCCTCACCGACCGCGAAAACCAGGTCAATTTCGTCATGGATCTCTTCCACCAGCGCGTCGAACAGTCGCAACTCACCGATCCCCTCTCCACCGACGAAGCTGTTTTCGGCGTCATCGACGGAATCGATTTAGGTTTCCCCACCGACGACGACTTCTTCCTCGGACGGAGATTCTCCGTCGGATCCGACTCCGACGAAGAACACTCTCACTCTCACACCCACGCGCACGCGGGGAATGACGACGACGACGACGACGACGAAGGCGTCCTAGGGTTCTGCGCGCATTCCGACGAAGAGTACAACGAGAACAACGACGACGTTGCCAGCATCCCTCTGTGCTGGGACGCGCTTCAATTGGAAGATAACAACAACATGAACAATTACGAGGATTTCGAGTGGGAGGAAGTGGTGGACGAGAGAGAGGTTCTCAGCATGCTCGACGACACCGTTTCCGTTACCCTCGGAATCGAAGAGGAAACCGAAGAAGAAGCCAACAATTTGGACTGGCAGGTTTTGTTGAACGCTAACAATTTGGAAGGAACAAATTCAGAGCCTTATTTCGGAGACAATGAGGATTTGGTTTACACGGCGGAGTACGAGATGATGTTCAGCCAATTCAACGACGATGCGTTTACTGGGAAGCCCCCGGCCTCTGCCTCCGTCGTTGGGACTCTTCCGTCGGTGGTTGTGACAGAAGCTGACGTGGCAAACGACAGCGTCGTTTGCGCGGTTTGTAAGGAGGAATTTGGCGTTGCGGAACGCGTGAAGGTGTTGCCGTGTTCGCATCGTTACCATGGTGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTATGAGTTTCCCACTGATGATGCTGATTATGAGCGGAGGAAGGCGCAGAGATCTGTTATTTGA 1038 0.5347 MADVTSTYLRHHHDPDDDQTLIPFPYWDLDFDFDPEFPPNPFSLTDRENQVNFVMDLFHQRVEQSQLTDPLSTDEAVFGVIDGIDLGFPTDDDFFLGRRFSVGSDSDEEHSHSHTHAHAGNDDDDDDDEGVLGFCAHSDEEYNENNDDVASIPLCWDALQLEDNNNMNNYEDFEWEEVVDEREVLSMLDDTVSVTLGIEEETEEEANNLDWQVLLNANNLEGTNSEPYFGDNEDLVYTAEYEMMFSQFNDDAFTGKPPASASVVGTLPSVVVTEADVANDSVVCAVCKEEFGVAERVKVLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSVI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1662 345 SUPERFAMILY RING/U-box 267 331 - -
Aed6g1662 345 Pfam Ring finger domain 284 325 IPR001841 -
Aed6g1662 345 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 16 74 - -
Aed6g1662 345 SMART ring_2 284 324 IPR001841 -
Aed6g1662 345 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Aed6g1662 345 PANTHER - 91 344 - -
Aed6g1662 345 MobiDBLite consensus disorder prediction 105 133 - -
Aed6g1662 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 331 IPR013083 -
Aed6g1662 345 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 91 344 - -
Aed6g1662 345 PANTHER - 16 74 - -
Aed6g1662 345 MobiDBLite consensus disorder prediction 105 121 - -
Aed6g1662 345 CDD RING-H2_RNF126_like 284 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1662 Aed-Chr6 20448894 20449931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1662 211 339 C3H Transcription Factor Family AT5G15820 47.445 1.18e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1662 - - gmx:100794303 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1662 6 20448894 20449931 Aed6g1662 6 20448894 20449931 ECH