Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1660 ATGTGTGATTCGGAATCGGAAGTGGCGCGGCCTCCGGAGTCGAGTGGTCCAATTCAGGTGAGGATGTCGTCGCCGCCGCCGCCGTCGTTGGGTTCCCCACTGAAGCGGCTCATATCCCAAGTCGAGGATGAAGAGGTGGTTTGTTGCGGGATTTGCTACGCCGAGCGTGGGGTTGCGATTGCAGGGGAAATCGATAGCTGCAGCCACTACTTCTGCTTCGTTTGCATCATGGAATGGGCCAAGCACGAGTCTCGATGCCCAATTTGCCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCCATGCATGGTGTCTTTTCTTCCTCCAGGGACGTTAAGGTCCCTCGTCGTGATCAGGTTTATCATCCTCATGGAAATATGGCAACTGGTCCTGCTGATTCTGAAACCAAATGTAGTGCCTGTCATGCTGGGACAGATGAACATCTTTTACTACTTTGTGATCTTTGTGATACTGCTTCGCACACATACTGTGTTGGCCTGGGCTACACTATTCCTGAAGGTGATTGGTTTTGTTACGATTGTGCTATTTCTCGGGAGACTTTCAATGGAGAATCAGACCCACAAAATGTTGCGCCAACAGCTGAGCCAAGTATAACCGTTGATATCTTTGATATTGTGAGGGACGCAGGCAGCCGGGTGGTTAAGAGACCAATGGTGTCTCCTTTACAGCAGAACCTATCATCTCCTTCTGTTATTCCTTTACCTGATAGGTTAAGTTACTTAAGTAGATTGAAAGGAAAAAGTCCTGTCACAGGTGTCTGTGATATGCAGCGTAATATAAAGGCCTTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCCGTTGCAATTCATTTCAACCTGGCAGCACAGTTAGTCAAAATCAAGATTCTAGTTCCTTATCACACCACAAATTAGATGATTTGCATTCTATGGCTTCCACGGGCCTTCAGCAATCCACTGTCCAAGGTGGTCCTTCTAACAAAATGTTGAATGAGAGAGTCTCTAAAGATGCTGAGAAGGCATGGAAAATGATGGACAGGGCAAAGAGAATACAACTGCCTCATCATAGAACATGCAGCATTCTGCAGGGAGTAGATAAACCCTCATGCAGTGTAGGAGCTAGAAAAACATCATTAGCACATTGTAACTTCCCAGAACTGAAAGATCAACATTCCAAAGCATTGGACTTAAGGAACACTAAAAAAGACTATTCTAGGCCCAACCAGAATTTGGAAAATCGCTCAACTCTGAGGTTGGAAGGGAAGAATCAAAGTAGGGTTACATGTGAGAAGATGATACATGTGAGGGACCATACTACTCATTCAGGTGGATATTCTGAACGTCCATTGTCCAGAAAGGTCCATACAAGCATCCAGGGTGTTCCCTGTCGTGAAGATGGACAGAGAAATGTTGCTGAGGAACAAAGCTCGTCTGCTTGCTTGGTAACATCAGCAGATTTAGCTTCCTCTCGTGACAAATTTGGTAGTGTGTTCCCCTCTAATAGGAATATGAATATTGTCAATGAAGAAAAGAGATTGGCTAAAAGCTCTGAGGATGGAAACACAAGAAATACTGCCGATGCTAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAACTAGAGATAAAAGATTAGGTGTTGATACCTTCAAGGTAGTTGCAAGACAAGCCACTCATACGATCTTGGCTGCTTGCAGTTCTGATCAGCAAAAGTCTTGTAGATCCTCCTCTAGCTCAGTATGCAGCCATGCCGACAATACTCCTCAGTTTCAGAAATCTACCTTAATGCCTAATTGTTGCAGGCGATGCTTTGGTGCCTTTGTAAATAATGTTGTAAAGTCCACCATGTTGGAGAAAGTGGGCTGCGCTTGA 1893 0.4501 MCDSESEVARPPESSGPIQVRMSSPPPPSLGSPLKRLISQVEDEEVVCCGICYAERGVAIAGEIDSCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPRRDQVYHPHGNMATGPADSETKCSACHAGTDEHLLLLCDLCDTASHTYCVGLGYTIPEGDWFCYDCAISRETFNGESDPQNVAPTAEPSITVDIFDIVRDAGSRVVKRPMVSPLQQNLSSPSVIPLPDRLSYLSRLKGKSPVTGVCDMQRNIKAFRENWNALRSGSLQFRCNSFQPGSTVSQNQDSSSLSHHKLDDLHSMASTGLQQSTVQGGPSNKMLNERVSKDAEKAWKMMDRAKRIQLPHHRTCSILQGVDKPSCSVGARKTSLAHCNFPELKDQHSKALDLRNTKKDYSRPNQNLENRSTLRLEGKNQSRVTCEKMIHVRDHTTHSGGYSERPLSRKVHTSIQGVPCREDGQRNVAEEQSSSACLVTSADLASSRDKFGSVFPSNRNMNIVNEEKRLAKSSEDGNTRNTADAKTEIQSLVKLNLKLLTRDKRLGVDTFKVVARQATHTILAACSSDQQKSCRSSSSSVCSHADNTPQFQKSTLMPNCCRRCFGAFVNNVVKSTMLEKVGCA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1660 630 Pfam Ring finger domain 49 90 IPR001841 -
Aed6g1660 630 ProSiteProfiles Zinc finger RING-type profile. 49 90 IPR001841 -
Aed6g1660 630 PANTHER HISTONE ACETYLTRANSFERASE 23 630 - -
Aed6g1660 630 MobiDBLite consensus disorder prediction 1 33 - -
Aed6g1660 630 SUPERFAMILY RING/U-box 41 97 - -
Aed6g1660 630 ProSitePatterns Zinc finger RING-type signature. 67 76 IPR017907 -
Aed6g1660 630 ProSiteProfiles Zinc finger PHD-type profile. 134 183 IPR019787 -
Aed6g1660 630 SMART PHD_3 136 181 IPR001965 -
Aed6g1660 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 112 IPR013083 -
Aed6g1660 630 SUPERFAMILY FYVE/PHD zinc finger 115 182 IPR011011 -
Aed6g1660 630 Pfam PHD-finger 137 181 IPR019787 -
Aed6g1660 630 PANTHER PHD-FINGER FAMILY PROTEIN 23 630 - -
Aed6g1660 630 SMART ring_2 49 89 IPR001841 -
Aed6g1660 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1660 Aed-Chr6 20441459 20444280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1660 126 184 C2H2 Transcription Factor Family AT3G01460 38.333 5.07e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed6g1660 PHD 4.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1660 - - gmx:100808541 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1660 6 20441459 20444280 Aed6g1660 6 20441459 20444280 ECH