Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1650 ATGGGGAGGGGAAGAGTGGAGTTGAAGAAGATCGAGAACAAGATCAACAGACAAGTTACGTTCTCAAAGAGAAGGTCTGGTTTGCTGAAGAAAACGCGCGAGATCTCTGTTCTTTGCGATGCTGATGTGGCTCTCATAGTTTTCTCCACTAAAGGCAAGCTTTTCGACTACTCCAACGACCCTTCTGTGGAAAGAATTCTTGAACGGTATGAGAGGTATTCGTATGCGGAGAGGCAACTTGTTGCAGATGATCAAGCAACAAATCAAAACTGGGTTATAAAACACGAAAAGCTCAAGGCTAGGTTGGAGGTACTACAGCGAAATCAAAGGAATTTTATGGGAGAAGAACTGGATAGCTTAAATCTTAGAGGTCTTCAGAATTTGGAACAACAACTAGATTCAGCTCTCAAACACATTAGATCACGAAAGAACCAAGCCATGCATGAATCTATTTCAGAGTTTCAGAAAAGAGATAAGGCACTCCGGGAACGTAACAAGTCGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGCAGTGGTTGCTGAAGAGCAAGAGGGGGTGGAAAATAACATGTCTGTTGTCTCTGTCCTTGTAACTCAACCACTGGAGTCCCTGAATATTGTTGGAGGCTCCCCAGAAACCAGATGCAATGAAGGAACTCCAACGTCAAGTAGTCGACCTAAAACCATTATTCCCCCATGGATGACTCGTTCTGCAACAAATGAATAG 729 0.4348 MGRGRVELKKIENKINRQVTFSKRRSGLLKKTREISVLCDADVALIVFSTKGKLFDYSNDPSVERILERYERYSYAERQLVADDQATNQNWVIKHEKLKARLEVLQRNQRNFMGEELDSLNLRGLQNLEQQLDSALKHIRSRKNQAMHESISEFQKRDKALRERNKSLAKKIKEKEKAVVAEEQEGVENNMSVVSVLVTQPLESLNIVGGSPETRCNEGTPTSSSRPKTIIPPWMTRSATNE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1650 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 Coils Coil 88 115 - -
Aed6g1650 242 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Aed6g1650 242 Coils Coil 158 185 - -
Aed6g1650 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 - -
Aed6g1650 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 204 - -
Aed6g1650 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Aed6g1650 242 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed6g1650 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed6g1650 242 MobiDBLite consensus disorder prediction 207 242 - -
Aed6g1650 242 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Aed6g1650 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed6g1650 242 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1650 Aed-Chr6 20364230 20369586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1650 1 214 MADS-box Gene Family AT1G26310 56.944 1.37e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed6g1650 K-box 9.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1650 K09264 K09260 gmx:100805348 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0255 3 1885776 1892249 Aed6g1650 6 20364230 20369586 ECH
Aed3g0998 3 7525474 7539471 Aed6g1650 6 20364230 20369586 ECH
Aed6g1650 6 20364230 20369586 Aed6g1650 6 20364230 20369586 ECH